Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b23
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643 38 0.005
07_01_0699 - 5276790-5278826 34 0.083
07_01_0696 - 5261008-5263128 34 0.083
07_01_0690 + 5221957-5223951 32 0.25
05_03_0520 + 14956476-14958179 32 0.25
07_01_1103 + 10141766-10143583 31 0.58
05_03_0624 - 16319364-16320581 30 1.0
05_03_0599 + 16026042-16027259 30 1.0
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 29 2.4
06_03_1000 - 26778993-26779478 28 4.1
07_01_0949 - 7988212-7989336 28 5.4
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498... 27 7.2
04_04_1287 - 32390422-32391588,32392472-32392645 27 9.5
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 27 9.5
01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563 27 9.5
>03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643
Length = 464
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 369
GV ADP + PL+DH + +A FF ++++NGKG
Sbjct: 38 GVIVDADPLSVPPWTPLADHTRGDEAFFFAGARAKNGKG 76
>07_01_0699 - 5276790-5278826
Length = 678
Score = 33.9 bits (74), Expect = 0.083
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 369
GV ADP + L+DH + DA FF ++++NGKG
Sbjct: 40 GVILDADPLCAPPWRLLADHGRGDDAFFFAEARAKNGKG 78
>07_01_0696 - 5261008-5263128
Length = 706
Score = 33.9 bits (74), Expect = 0.083
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 369
GV ADP + L+DH + DA FF ++++NGKG
Sbjct: 40 GVILDADPLCAPPWRLLADHGRGDDAFFFAEARAKNGKG 78
>07_01_0690 + 5221957-5223951
Length = 664
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 369
GV ADP + L+DH + +A FF ++++NGKG
Sbjct: 40 GVILDADPLCAPPWRLLADHGRGDEAFFFADARAKNGKG 78
>05_03_0520 + 14956476-14958179
Length = 567
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 369
GV ADP + L+DH + +A FF + ++NGKG
Sbjct: 38 GVILEADPLSAPPWKLLADHGRGDEAFFFAEAHAKNGKG 76
>07_01_1103 + 10141766-10143583
Length = 605
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKG 369
GV ADP + + L++H + + FF ++++NGKG
Sbjct: 42 GVILEADPLSVPPWKLLAEHGRGDEGFFFAEARAKNGKG 80
>05_03_0624 - 16319364-16320581
Length = 405
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 247 GQGVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKGVYIISGCEQRPMGMCNGLF 426
GQ + ADP +DH + +A F ++++N KG S E + M + G
Sbjct: 35 GQPLPLEADPLSARPRNLAADHGRGDEAFFLAEAQAKNAKGKRQRSTVEGQSMCVDGGRL 94
Query: 427 YIGLPGKG 450
+ G+G
Sbjct: 95 RVPDDGRG 102
>05_03_0599 + 16026042-16027259
Length = 405
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +1
Query: 247 GQGVKAIADPADMERAQPLSDHAKAFDAIFFISSKSENGKGVYIISGCEQRPMGMCNGLF 426
GQ + ADP +DH + +A F ++++N KG S E + M + G
Sbjct: 35 GQPLPLEADPLSARPRNLAADHGRGDEAFFLAEAQAKNAKGKRQRSTVEGQSMCVDGGRL 94
Query: 427 YIGLPGKG 450
+ G+G
Sbjct: 95 RVPDDGRG 102
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 199 RKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHA 315
++ K + A GRAGQ + D D P SDH+
Sbjct: 1146 KEMQKKQARAKIKGRAGQNPSEVVDDEDQRSPPPKSDHS 1184
>06_03_1000 - 26778993-26779478
Length = 161
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 329 ASKALAWSLNGCARSMSAGSAM-ALTPCPARPSLP 228
A+ A+ S +GC SAGSA+ T CP P P
Sbjct: 65 AAAAVVESSDGCVTPTSAGSALRPATVCPPAPRKP 99
>07_01_0949 - 7988212-7989336
Length = 374
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 253 GVKAIADPADMERAQPLSDHAKAFDAIFFIS-SKSENGKG 369
GV ADP + + L+DH + D FF++ + ++N KG
Sbjct: 40 GVVLDADPLSAQPWRLLADHGRGGDEAFFLAEAHAKNAKG 79
>01_01_0653 -
4981517-4981738,4981841-4981976,4982066-4982121,
4982228-4982284,4982373-4982450,4982533-4982619,
4982707-4982767,4982862-4982950,4983048-4983145,
4983242-4983341,4983983-4984042
Length = 347
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -1
Query: 253 LARPDHHYRQPNSYLNTFCNNKELRKRHILNNTTSPVRRRYQISV 119
L RP P S LN FC + EL + P++ R + V
Sbjct: 303 LYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 SSKNSAAGNDGRAGQGVKAIADPADMERAQPL-SDHAK 318
+SK+S + + + Q V+ +ADPAD++ P+ +D K
Sbjct: 375 TSKDSLSEANQNSTQAVEPVADPADVKPRMPIYNDETK 412
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Frame = +1
Query: 187 LYYYRKYSSK-----NSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKAFDAIFFISSK 351
LYY YS N A NDG G + D + + S + D + S +
Sbjct: 393 LYYDMSYSVAYSTFANLPADNDGALGSEATSNISCDDADNS---SKGKLSADIVAPYSEQ 449
Query: 352 SENGKGVYIISGCEQRPMGMCNGLFYIGL 438
+E + + SGC G+C G + G+
Sbjct: 450 TETASLLDLYSGCGAMSTGLCLGFAFSGI 478
>01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563
Length = 412
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 208 SSKNSAAGNDGRAGQGVKAIADPADMER-AQPLSDHAKAFDAIFFISSKSENGKGVYIIS 384
SS +AAG RAGQG +A +E A LS + + + ++ + V ++
Sbjct: 69 SSSAAAAGKRARAGQGQQAAVPACSVEGCAADLSKCVRDYHRRHKV-CEAHSKTAVVTVA 127
Query: 385 GCEQRPMGMCNGLFYIG 435
G +QR C+ +G
Sbjct: 128 GQQQRFCQQCSRFHLLG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,386
Number of Sequences: 37544
Number of extensions: 289381
Number of successful extensions: 816
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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