Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b21
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   6.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   6.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   6.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 420 SVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL*TDLP 295
           S SG +  TE+ D P S +   AP+    +  +  K   D+P
Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 57  YF*NLDNRLQKRFN*NFNF 1
           Y   L NR+QK  N +FNF
Sbjct: 380 YMLALSNRMQKIINNDFNF 398



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 236 KREGSRRSYNQQN*GRSRNEGRSVHN 313
           KR G+R++ NQ N   +      VH+
Sbjct: 514 KRNGNRQNDNQNNQNDNNRNDNQVHH 539


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 239 VSVNIGTVDVSVANVNGILDCLRHLAWLR 153
           V VN G   V + NVN     ++   WLR
Sbjct: 52  VHVNFGLAFVQLINVNEKNQIMKSNVWLR 80


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 57  YF*NLDNRLQKRFN*NFNF 1
           Y   L NR+QK  N +FNF
Sbjct: 378 YMLALSNRMQKIVNNDFNF 396


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 45  LDNRLQKRFN*NFNF 1
           L NR+QK  N +FNF
Sbjct: 379 LSNRMQKIVNDDFNF 393


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 45  LDNRLQKRFN*NFNF 1
           L N++QK  N +FNF
Sbjct: 381 LSNKMQKMVNNDFNF 395


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 45  LDNRLQKRFN*NFNF 1
           L N++QK  N +FNF
Sbjct: 381 LSNKMQKMVNNDFNF 395


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 45  LDNRLQKRFN*NFNF 1
           L N++QK  N +FNF
Sbjct: 381 LSNKMQKMVNNDFNF 395


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 469 DWSVGKREPSS 437
           DWSVGK+  +S
Sbjct: 42  DWSVGKKNSNS 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,755
Number of Sequences: 438
Number of extensions: 3416
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)