Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b18
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827...   101   5e-22
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           89   3e-18
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    34   0.069
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     29   3.4  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     28   4.6  

>08_02_1223 -
           25381462-25381575,25381822-25382061,25382570-25382707,
           25383397-25383849,25384528-25385010
          Length = 475

 Score =  101 bits (241), Expect = 5e-22
 Identities = 50/101 (49%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = +3

Query: 243 IMRFREYLKIPSVQPDVDYSACVEFLTAQARLMNLPVMVYEIVPKKPVVVVTLQGLQPDL 422
           + RFREYL+I + QP  DY+A V FL  QA    L     E+V  KP++++   G +P L
Sbjct: 31  VSRFREYLRIDTAQPAPDYAAAVAFLRGQAGAAGLEARTLELVAGKPLLLLRWPGRRPSL 90

Query: 423 PSILLNSHMDVVPVNEELWTYPPFEAKLTD-DGFIYARGSQ 542
           PS+LLNSH DVVP     W +PPF A L +  G IYARGSQ
Sbjct: 91  PSLLLNSHTDVVPSEPHKWDHPPFSAALDEASGRIYARGSQ 131


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
 Frame = +3

Query: 177 AVFGLFYSEIIFNMAAWENDE----EIMRFREYLKIPSVQPDVDYSACVEFLTAQARLMN 344
           AV  L  S ++   AA    E    +I RF++YL+I +  P  DY+    FL   A  + 
Sbjct: 15  AVVFLLLSAVVARPAAGAFTELESAQIGRFQDYLRIRTAHPSPDYAGAAAFLLPYAASLG 74

Query: 345 LPVMVYEIVP--KKPVVVVTLQGLQPDLPSILLNSHMDVVPVNEELWTYPPFEA-KLTDD 515
           L        P   KP++++T  G  P LPS+LLNSH+D VP   E W +PPF A +    
Sbjct: 75  LRAATLHFTPCKSKPLLLLTWPGTDPSLPSLLLNSHLDSVPAEPEQWLHPPFAAHRDAAT 134

Query: 516 GFIYARGSQDMKSTGMIY 569
           G +YARG+QD K   + Y
Sbjct: 135 GRVYARGAQDDKCLPIQY 152


>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 387 VVVTLQGLQPDLPSILLNSHMDVVPVNEELWTYPPFEAKL--TDDGFIYARGSQD 545
           V+V   G  P      +  HMDVVP N + W + PF       D   +  RG+ D
Sbjct: 80  VIVEYPGTVPGRAISFVGMHMDVVPANPDEWDFDPFSLTFDSEDKDKLRGRGTTD 134


>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 257 GIFKNTKRTARCGL*CLRRVLDSASEVNEFARYGI*DSAEETSSCCHATGPSARSTIDFA 436
           G+  NT+RT R     +++   S  +  E +R+     A   SSC H    +AR    F 
Sbjct: 112 GLVLNTRRTVRN----IKKKACSCGDNGEASRHTNDGEALAGSSCIHKLFSNARERSQFL 167

Query: 437 QFSYGCRA 460
             +Y C+A
Sbjct: 168 CCAYPCKA 175


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 429 ILLNSHMDVVPVNEELWTYPPFEAKLTDDGFIYA---RGSQD 545
           IL   H++V  +     + PP   KL DD  IYA   +GSQD
Sbjct: 315 ILCTEHVEVARLCVPQDSVPPEHKKLLDDQIIYAFYEKGSQD 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,237
Number of Sequences: 37544
Number of extensions: 293004
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)