Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b18
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.23 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.92 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 346 KFINLACAVKNSTQAL*STSGCT 278
           KF +LACA + S+ A+ +TSG T
Sbjct: 345 KFPSLACAAEPSSDAVSTTSGTT 367


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 234 DEEIMRFREYLKIPSVQPDVDYSACV 311
           +EEI R RE+ K   V+P   Y++ +
Sbjct: 488 NEEIQRNREFYKNADVRPPFTYASLI 513


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 400 SVTTTTGFFGTISYTITGKFINLACAVKNS 311
           S TTTT    +   TI    +N  C+V NS
Sbjct: 325 SSTTTTSPMTSTKSTIVRNHLNSTCSVTNS 354


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 80  NSFFRLSTKCFDANTNNMH*LITKV 6
           N   +L T+C   +  N+H  ITK+
Sbjct: 95  NEINQLITECSAISDTNVHLKITKI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,307
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)