Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b15
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    50   2e-07
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.3  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   4.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   9.1  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   9.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.1  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 21/46 (45%), Positives = 30/46 (65%)
 Frame = +1

Query: 385 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLXILLLSADFWT 522
           HP  +FF L+FR  AI+ YIL  +F+ SF+  F++   LL+ D WT
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWT 92


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 NFQDYLLFLFNSICLTAVEIIHQYLSTY 223
           NF+  L   F SIC+  + + ++YL+ Y
Sbjct: 63  NFKSLLFLFFVSICVVILVVRYRYLNKY 90


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 510 CRQQ*NX*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 391
           CR++    Y  C++  G P  Q   NY     H  ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 379 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLXI 495
           F+HP+      +FRC  +  + L  + S SF  SF+  +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 373 KQFVHPYIVFFHLVFRCSAI 432
           K+FV PY + + LVF  S+I
Sbjct: 372 KEFVQPYFIIYTLVFFGSSI 391


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 465 VGEPPTQDVHNYRRASEHQVEE 400
           VG+  TQDV  YR  S+ Q +E
Sbjct: 733 VGKRKTQDVQFYREVSDIQFDE 754


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 518 QKSADSSRMX-NTKLAMNESENHPHRMYTIIAEHRNTR 408
           QK   S R+  NT+  + +  N P + +TI+++   TR
Sbjct: 208 QKEGSSWRLDLNTRDKILDKNNRPLQPFTIVSDRNETR 245


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 379 FVHPYIVFFHLVFRCSAIIVYILCGWF 459
           FV+P +  F L   CS ++ ++L G F
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,191
Number of Sequences: 5004
Number of extensions: 43638
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)