Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b14
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 143 7e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 143 7e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 136 6e-33
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.57
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.76
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 30 1.0
01_05_0305 + 20659199-20660026,20660147-20660179 29 1.7
12_02_0020 - 12388777-12389062,12389637-12389818 28 4.0
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 7.1
09_03_0062 - 11969719-11970036,11970115-11970843 27 7.1
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 7.1
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 27 7.1
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 27 9.3
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 9.3
01_01_0743 - 5763654-5766902 27 9.3
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 143 bits (346), Expect = 7e-35
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +1
Query: 40 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 390
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 391 DRSAY 405
DR +
Sbjct: 120 DRPRF 124
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 143 bits (346), Expect = 7e-35
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = +1
Query: 40 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 390
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 391 DRSAY 405
DR +
Sbjct: 120 DRPRF 124
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 136 bits (330), Expect = 6e-33
Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
Frame = +1
Query: 40 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGPVG-RPDAPARSAE 390
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + GP G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 391 DRSAY 405
DR +
Sbjct: 120 DRPRF 124
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.57
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 70 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 246
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 247 TNEGIE-YLRIFLHLP 291
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 0.76
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +1
Query: 169 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 339
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 340 VRRGP-----VGRPDAPARSAED 393
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 29.9 bits (64), Expect = 1.0
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 AFLC*VSLQAAFKMLMPKQNRVAIYEYLFKEGVMVAK--KDYHAPKHTELEKIPNLQVIK 174
AFL V+ + F L + + Y+ ++ G VA +H PK K+ +
Sbjct: 151 AFLFLVTFSSLFCTLPLRNTMIVDYKLIYPSGSAVAGIVNSFHTPKGATKAKLQ----VN 206
Query: 175 AMQSLKSRGYVKEQFAWRHFYWYLT 249
AM KS V FAW F W+ T
Sbjct: 207 AM--FKS---VAGSFAWAFFQWFYT 226
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +1
Query: 280 LHLPPEI-----VPATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 435
L LPP + A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 122 LKLPPRLQAAAAAAAAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 355 VGRPDAPARSAEDRSAYRRTPAAP 426
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 339 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 247
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 262 QYPHWLGTSKSASRQ 218
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 306 RHNFRRKVQEYSQVFNTLIG*VPVKVPPGKLFFDITSGLE 187
R+NFR KV+E S F + +G PP K+ D+ G++
Sbjct: 314 RNNFRAKVKEDSATFPSSLGMGRALSPP-KMSVDLEMGMK 352
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 435 CNTRGSRSTSVCRSVLSRAGWGIRTTNRATAYCL 334
C T ++ + + R WG R TNRAT + L
Sbjct: 327 CPTCLCTGMAMANNSIDRRAWGSRLTNRATLHIL 360
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 419 AGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGG 288
A V L+AD +A R AS R R V++RTE + ++ G
Sbjct: 408 AVVALFADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEEG 451
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 70 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 246
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 247 TNEGI 261
N +
Sbjct: 158 PNGSV 162
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 398 DLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 297
+ +SA R + R PR V V+ ERL AG +
Sbjct: 44 EAASAPRGAKNSRSRAPRTDVDVQIERLCRAGEL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,972
Number of Sequences: 37544
Number of extensions: 232919
Number of successful extensions: 762
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -