Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b11
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1148 + 30748787-30748835,30748930-30749000,30749261-307493...    46   2e-05
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    31   0.70 
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    29   3.7  
05_07_0107 - 27730730-27730831,27730922-27730997,27731213-277313...    27   8.6  

>03_05_1148 +
           30748787-30748835,30748930-30749000,30749261-30749322,
           30749470-30749569
          Length = 93

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 438 GAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILGWIAMVF 575
           G    AG+ +F GTCY  A+  DRK     PLGG   I  W +++F
Sbjct: 48  GGLLTAGIVLFSGTCYTVAYLEDRKYSSTAPLGGFAFIAAWASLLF 93


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 203 NDKSSIVATCSRGRSFC*AGRTKWCCCCNPWC 298
           +D S IV    R R  C   R +WCC C  WC
Sbjct: 19  SDSSGIVG---RKRRRCDLIRERWCCLCPVWC 47


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 429 YIAGAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILG 557
           Y   A++  GMGM  GTCY   F+G   +    P  G+C+  G
Sbjct: 412 YAFNAYY-HGMGMGSGTCY---FSGVAVITTTDPSHGSCVYAG 450


>05_07_0107 -
           27730730-27730831,27730922-27730997,27731213-27731340,
           27731635-27731830,27731918-27732146,27732387-27732563,
           27733019-27733094
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 188 TTNNHNDKSSIVATCSRGRSFC*AGRTKWCCCCNPWC 298
           T +  ND +  V TC R    C    TK   C  P C
Sbjct: 89  TLDQSNDDNLAVVTCQRQPEHCETQMTKEVACPRPAC 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,975
Number of Sequences: 37544
Number of extensions: 271936
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)