Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b11
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    28   0.060
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 168 KSSSVDKPPTTIMIRAPLWQLAQEAGPFVRLAGLSGAAAVILGAMGAHRTFPE 326
           KS S+ +PP        +W+  +    F+R   LSG+   +       R F E
Sbjct: 307 KSKSITEPPKNCADSGSIWETGKNLFEFIRKQVLSGSTGKVAFDDNGDRIFAE 359


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 151 RNKLIVPSVTVLIINASI 98
           +NKLI  S TV I+N  I
Sbjct: 194 KNKLIEESKTVFILNNEI 211


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 306 AHRTFPETEAKDDLKKIFETANRFH 380
           A  TFP   +K   + +  T +RFH
Sbjct: 190 AMETFPSVYSKTRRRALEHTLDRFH 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,383
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)