Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b09
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 61 1e-10
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 44 1e-05
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 42 7e-05
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 29 0.73
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 1.7
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 1.7
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 2.9
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 26 5.1
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 5.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 6.8
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 9.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.0
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 60.9 bits (141), Expect = 1e-10
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Frame = +3
Query: 219 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 398
+++ AGSRY+P A G+SH+L A TT+ S+ I R+ +G +S RE I
Sbjct: 45 LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102
Query: 399 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA---PRLKYDIISLPPQIRAVDLLHK 569
T + L +L +V +F P++L + R++ ++ A+ LH+
Sbjct: 103 LTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHE 162
Query: 570 AAYRRGLGNSLFI 608
A+ RG+GN +++
Sbjct: 163 KAFHRGIGNEVYL 175
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 44.4 bits (100), Expect = 1e-05
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Frame = +3
Query: 234 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEA 413
KAGSRYE + G+SH + A T+ ++ KL +G S RE + Y
Sbjct: 74 KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133
Query: 414 TQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIISL--PPQIRAVDLLHKAAYRRG 587
D + ++L V + + +L + Y+ L P + H A++
Sbjct: 134 FNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSELWTKPDALLGEFAHVTAFQNN 193
Query: 588 -LGNSLFISPKRIN 626
LGN L +P ++N
Sbjct: 194 TLGNCLLCTPDKVN 207
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 41.9 bits (94), Expect = 7e-05
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Frame = +3
Query: 219 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 398
V + AGSR E G +H L A TKN S ++ + GA+++A RE
Sbjct: 46 VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105
Query: 399 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP---RLKYDIISLPPQIRAVDLLHK 569
Y A ++ + +A+ +L ++++N + R + ++ + ++ D LH
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMADEV-VFDHLHA 164
Query: 570 AAYR-RGLGNSLFISPK 617
AY+ LG ++ + PK
Sbjct: 165 TAYQGHPLGRTI-LGPK 180
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 0.73
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 141 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 311
DV+ +S LP + A D+GS +R + + E E+G+ H+LR +
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191
Query: 312 KNISSFLIQRKLSQIG 359
+++ + Q+ S G
Sbjct: 192 GTLATRVTQQAQSLQG 207
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +3
Query: 129 AVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLT 308
A + VR+Q LP+ FV GSP Q +LG + + + G+T
Sbjct: 857 APHRAVRLQIEDLPSNVFVTNRGRGSPA--------------DQYDLGAAQFITAVNGVT 902
Query: 309 TKNISSFLIQRKLSQIGAYVSAS 377
T N+ F+ + + +YV S
Sbjct: 903 TLNLEDFVREIRKIDDNSYVRVS 925
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 381 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 482
+RE YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 271 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 119
PN ACG+ R+ + + T ++ + +A N LDW + S + A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 267 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 422
L S L S +G T+ N+S+ QR ++ + S + D +YY T D
Sbjct: 79 LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 16 FVALLPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 123
FVA L V + L +WH KL F ++ PK+
Sbjct: 70 FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 5.1
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +3
Query: 255 PQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR-EFIYYTL-EATQDKL 428
P+AEL H+L G + ++S+F I +++ S R E ++ EA+ +
Sbjct: 19 PRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSER 78
Query: 429 NDALE-ILNNLVSNQEFRPWELNDNAPRLKYDIISLPP 539
AL+ ILNN S+ D+ RL D +SL P
Sbjct: 79 KLALQGILNNCSSSLLSFASSTLDSLVRL--DFLSLLP 114
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 628 SLILFGEMKSELPSPRR*AALWSKSTARIWGGREIISYFRRGALSLS 488
S++ F + E + + AL SK + +WGG++ I+ F LSL+
Sbjct: 842 SILHFANLVGEPATQKSSIALVSKMVS-LWGGKDGIAGFENFTLSLT 887
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 153 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 332
Q+ ++ TFV A + RV +FK+ + P A + + LTT + S
Sbjct: 174 QNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRS 233
Query: 333 IQ 338
+Q
Sbjct: 234 VQ 235
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 252 EPQAELGLSHVLRS-AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTL 407
E + +L H+L + AGL T++ SF+ + ++SQ+ + S D + Y++
Sbjct: 298 EKRQKLERDHMLMAQCAGLMTRSDKSFIARIQISQLMSEDPESDDFYYRVYSI 350
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 517 YFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV**MNSLSPEAL 368
YF S++ H + F T + +++ SFN++ + S ++ SP L
Sbjct: 182 YFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNVTTIPSSA--VHYASPSGL 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,210
Number of Sequences: 5004
Number of extensions: 54176
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -