Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b09
(628 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 124 3e-28
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 124 3e-28
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 122 8e-28
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 59 1e-08
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 59 1e-08
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 59 1e-08
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 57 6e-08
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 54 4e-07
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 124 bits (299), Expect = 3e-28
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 2/176 (1%)
Frame = +3
Query: 102 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 281
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 282 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 461
+LR + LTTK SSF I R + +G +S + RE + YT+E + ++ +E L N+
Sbjct: 82 LLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVT 141
Query: 462 SNQEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRI 623
+ EFR WE+ D P+LK D + PQ ++ LH AAYR L N L+ RI
Sbjct: 142 TAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYRI 197
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 124 bits (299), Expect = 3e-28
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 2/176 (1%)
Frame = +3
Query: 102 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 281
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 282 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 461
+LR + LTTK SSF I R + +G +S + RE + YT+E + ++ +E L N+
Sbjct: 82 LLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVT 141
Query: 462 SNQEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRI 623
+ EFR WE+ D P+LK D + PQ ++ LH AAYR L N L+ RI
Sbjct: 142 TAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYRI 197
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 122 bits (295), Expect = 8e-28
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 2/176 (1%)
Frame = +3
Query: 102 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 281
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 282 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 461
+LR + LTTK SSF I R + +G +S + RE + YT+E + ++ +E L N+
Sbjct: 82 LLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVT 141
Query: 462 SNQEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRI 623
+ EFR WE+ D P+LK D + PQ ++ LH AAY+ L N L+ RI
Sbjct: 142 TAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYQNALANPLYCPDYRI 197
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 58.8 bits (136), Expect = 1e-08
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +3
Query: 87 IRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAE 266
+R +R A A A++ Q S+L N VA+ + P V + GSR+E +
Sbjct: 27 LRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKN 86
Query: 267 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 446
G + L A TKN +++++ +GA+++A RE Y ++A L A+E+
Sbjct: 87 NGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 447 LNNLVSN 467
L ++V N
Sbjct: 147 LGDIVQN 153
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 58.8 bits (136), Expect = 1e-08
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +3
Query: 87 IRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAE 266
+R +R A A A++ Q S+L N VA+ + P V + GSR+E +
Sbjct: 27 LRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKN 86
Query: 267 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 446
G + L A TKN +++++ +GA+++A RE Y ++A L A+E+
Sbjct: 87 NGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 447 LNNLVSN 467
L ++V N
Sbjct: 147 LGDIVQN 153
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 58.8 bits (136), Expect = 1e-08
Identities = 36/127 (28%), Positives = 62/127 (48%)
Frame = +3
Query: 87 IRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAE 266
+R +R A A A++ Q S+L N VA+ + P V + GSR+E +
Sbjct: 27 LRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKN 86
Query: 267 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 446
G + L A TKN +++++ +GA+++A RE Y ++A L A+E+
Sbjct: 87 NGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 447 LNNLVSN 467
L ++V N
Sbjct: 147 LGDIVQN 153
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 56.8 bits (131), Expect = 6e-08
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Frame = +3
Query: 117 QAAPAVKKDV-RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRS 293
QAA V +V + + L + VA+ D+G V + AGSRYE + G +H L
Sbjct: 46 QAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEH 105
Query: 294 AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQE 473
A TK S ++ ++ +GA+++A RE Y +A L A+EIL +++ N
Sbjct: 106 MAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 165
Query: 474 FRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYRR-GLGNSL 602
E+ + ++ + ++ V D LH AY+ LG ++
Sbjct: 166 LGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTI 211
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 54.0 bits (124), Expect = 4e-07
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 4/166 (2%)
Frame = +3
Query: 117 QAAPAVKKDV-RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRS 293
QAA V +V + + L + VA+ D+G V + AGSRYE + G +H
Sbjct: 37 QAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFPEH 96
Query: 294 AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQE 473
A TK S ++ ++ +GA+++A RE Y +A L A+EIL +++ N
Sbjct: 97 MAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 156
Query: 474 FRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYRR-GLGNSL 602
E+ + ++ + ++ V D LH AY+ LG ++
Sbjct: 157 LGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTI 202
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,757,300
Number of Sequences: 237096
Number of extensions: 1839657
Number of successful extensions: 3561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3561
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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