Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b07
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   160   7e-40
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...   105   2e-23
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    69   2e-12
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score =  160 bits (388), Expect = 7e-40
 Identities = 78/101 (77%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
 Frame = +3

Query: 264 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 440
           ++VA+SKF+ K  LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 441 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLI 563
           RLRPDRVAMQDATAQMAMLQFISSGLP+ AVPSTIHCDHLI
Sbjct: 87  RLRPDRVAMQDATAQMAMLQFISSGLPKTAVPSTIHCDHLI 127


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score =  105 bits (252), Expect = 2e-23
 Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
 Frame = +3

Query: 264 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 440
           ++VA+SKF+ K  LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 441 RLRPDRVAMQDATAQMA 491
           RLRPDRVAMQDA   MA
Sbjct: 87  RLRPDRVAMQDAVDVMA 103


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +3

Query: 465 MQDATAQMAMLQFISSGLPRVAVPSTIHCDHLI 563
           MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLI
Sbjct: 1   MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLI 33


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 270 VAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDP 404
           VA + F K P P  +    ++VVK+ L     L+E+I+ SH   P
Sbjct: 17  VAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIP 61


>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 285 FDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLD 398
           FDKV  P  K  KN+ + K +L   L LS KIL+   D
Sbjct: 128 FDKVVKP--KTGKNIVIYKVKLLTNLNLSNKILFQFQD 163


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 276  MSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKIL 383
            +++FD + L     T+ +E  K++L  ELT +++I+
Sbjct: 1037 IARFDNIALNERNSTRKIEREKEKLNEELTTAKEII 1072


>Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical
           protein C31E10.3 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 244 DTLKHLCWI--SESTTLVLLPWPCKTLIQCAMVAGLQYIKRINLEK 113
           +T    CW   SE TT  +  WP      C+++     I +I LEK
Sbjct: 28  ETCSSPCWFNKSEVTTETIELWPTNCTKVCSILTFTSTINKIPLEK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,340
Number of Sequences: 27780
Number of extensions: 262980
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)