Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b05
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    28   0.94 
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   2.9  
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.8  

>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 72  STVCLEPRDWLSIFSSVQ 19
           STVC  P +WL  FS  Q
Sbjct: 575 STVCYSPNEWLDFFSKFQ 592


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 9   LALIEHC*KCSTNHEAPSIQWKNVVAIVDNLLNIFISNYFSKRRYCSFSPK 161
           L+L+ +  K   +  A S+QWK  +    NLL  + S   S +R  SFS K
Sbjct: 164 LSLLINACKDRLSSSAISLQWKKTLECFTNLLG-WNSESASVKRTTSFSKK 213


>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 191 FTHRGKGSDFQYLVMGDEMDPCECLWNHELAMRRLISLL 307
           FT+  + S F++L     +DP E  W   + +    SLL
Sbjct: 15  FTNAKRYSSFRFLFPSKNLDPNETKWGWNIRIATFRSLL 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,408
Number of Sequences: 5004
Number of extensions: 35682
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)