Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b02
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 499 VTLPFVQWRLAWPHGRDAGGDNLRRVQF 416
           VT+PF +        R  GGD+L R  F
Sbjct: 551 VTIPFERTFRNLDENRPIGGDSLERFDF 578


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 365 PCLRKSYILTWMTPKDRKLNAAQVI 439
           P L + +IL W   KD  +   QVI
Sbjct: 599 PSLDQVWILNWRNQKDIDVKTVQVI 623


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 391 HLDDPKGQEIERGAS 435
           H+DDP G     GAS
Sbjct: 333 HIDDPVGASATHGAS 347


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 180 QNSHTVRHGRRTS 142
           +  H +RHGRR S
Sbjct: 79  ETHHPIRHGRRQS 91


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 271 VAMSKFDKVPLPYEKLT 321
           +A+S+FD +  PY  LT
Sbjct: 207 MALSQFDLMGSPYRNLT 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,618
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)