Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17a20
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    54   2e-08
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   3.4  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   4.4  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
 Frame = +1

Query: 217 VQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEK------VKLDXXXXXXXXXXXXX 378
           V YC  C++P+EYCE+     KCK+WL+ + P  ++K      +  D             
Sbjct: 12  VLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGEQDLSKDLENTLNVSGTKDS 71

Query: 379 XXXXXXXMLKSKKK----EDVPKL---VQVSRAPRGKKKSVTVVSGLSTFDIDLKSSSKI 537
                   L  ++K    E+  ++   V +    R K+K VT V GL  F I+ K ++K+
Sbjct: 72  NAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETKKAAKM 131

Query: 538 FWHK 549
             +K
Sbjct: 132 LANK 135


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 84  IKNFYFFYCYSLGRISFDFFLFI 16
           +K+FYF Y   +  +SFD  LF+
Sbjct: 186 LKSFYFKYIQIIEALSFDALLFV 208


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 518 RSISKVLNPDTTVTDFFLPRGARDTCTNLGTSSFFLDFN 402
           RS  +V+NP+ +VTD   P G  +     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 132 FHYFTLIIQNIVMNNEIKNFYFFYCYSLGRISFDFFLFIYFK 7
           FH   LI+  I+ + EI +F FF C      S  F +   FK
Sbjct: 22  FHVCLLIMFLILYSQEILSF-FFMCSKFSMNSLKFCVLFSFK 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,613
Number of Sequences: 5004
Number of extensions: 33984
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)