Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17a18
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 32  RTLAEFTQNLVSFFLSYRSENN 97
           RT A F   +V+  + YR++NN
Sbjct: 243 RTFAPFFTRVVTDTIKYRNDNN 264


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 25  ARSDAGRVHSESCVVFFVISQ 87
           ARS AG VHS    V  V++Q
Sbjct: 83  ARSPAGSVHSRDVNVRAVVAQ 103


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 33  GRWPSSLRILCRFFC 77
           G+WP + ++ C  +C
Sbjct: 61  GQWPETRQLKCYMYC 75


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 541 FFEALRDILAHSEGSCNDF*LNIAYFLNA*LFCYFIFFELYCLEICFSVN 392
           F   L  +   +EG    F L  +Y ++     + +FFE   +   F VN
Sbjct: 424 FVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVN 473


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 541 FFEALRDILAHSEGSCNDF*LNIAYFLNA*LFCYFIFFELYCLEICFSVN 392
           F   L  +   +EG    F L  +Y ++     + +FFE   +   F VN
Sbjct: 477 FVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVN 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,279
Number of Sequences: 438
Number of extensions: 3159
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)