Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17a14
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 4.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 5.8
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 7.6
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 7.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.1
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +3
Query: 213 VSGVLSSSQCTVKDSQT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGS 392
+S +SSS V+ T + T + ++NT + R KPT TT S A +
Sbjct: 307 ISSTISSSSFIVESPSVALSTS-STTTITNASTPAANT--IISRSSKPTDTTNSISFANT 363
Query: 393 TVSRSETVQTAPRVTGSS 446
T + T T+P SS
Sbjct: 364 TPENTSTQITSPTAVNSS 381
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.4
Identities = 25/100 (25%), Positives = 40/100 (40%)
Frame = +3
Query: 228 SSSQCTVKDSQT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRS 407
+S+ CT S + +P T +S + S+ P T +T + S T S S
Sbjct: 225 TSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284
Query: 408 ETVQTAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKT 527
T T+ TG+S PT+ T P ++T +
Sbjct: 285 CTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324
Score = 25.0 bits (52), Expect = 7.6
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = +3
Query: 162 SSTVRCHAPG*RCNITWVSGVL-SSSQCTVKDSQT*RRTMWPPSPTTRKALRSSNT*RSL 338
SST P N T + VL +S+ T T T P T + SSN S
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISS 577
Query: 339 KRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSS 446
P T T + + ++V + T T+P T SS
Sbjct: 578 STPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSS 613
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 2.5
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 80 SLSAVSVTQGVDYTTSGSIRIQSSGSPVVYREVPRARIALQHNLGLGGAVVITMYRKGFS 259
S+S V V+ G + T S++ + REVP+ + + G G+ V+ + K F
Sbjct: 596 SVSNVRVSGG-SFKTFVSVKGAPEVIATMLREVPKDYEKIYKDYGRKGSRVLALGYKYFK 654
Query: 260 NVTPNN 277
N P N
Sbjct: 655 NYIPEN 660
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 65 YLEILSLSAVSVTQGVDYTTSGSIRIQSSGSPVVYREV 178
Y+E S+SA + T + Y+ S + + S PVV V
Sbjct: 741 YIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVVTNTV 778
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 296 NPEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEG 433
NP G K FK + + E + Q + GI P GAEG
Sbjct: 38 NPNGEKKFKEISLAYEVLSDPQRRKLYDQYGITEGNAAPPPPGAEG 83
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 450 RKKAKGKSPTTALKNPT*PSRSATKTWPIL 539
R+K G S TTA P PS+ +++ P+L
Sbjct: 232 RRKDSGSSKTTATYIPHNPSKKSSQHLPLL 261
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +2
Query: 254 FSNVTPNNVAAVADNPEGFKVFKYMKIL 337
FSN TP++++ ++ P F++F ++ +
Sbjct: 695 FSNTTPSSISKLSIQPPTFQLFSTLETI 722
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 74 ILSLSAVSVTQGVDYTTSGSIRIQSSGSPVVYREVPRARIALQHNLG 214
+LSLS+ +G YT +I+ + V +RIA+ +N G
Sbjct: 409 LLSLSSDGTVRGWKYTGEQLFKIRCDSKQPLSMSVTDSRIAIAYNDG 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,515
Number of Sequences: 5004
Number of extensions: 45613
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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