Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17a08
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.70 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.92 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.6  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   8.6  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.6  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 154  YRSIDCIVESIAKCSKHIIIRRISVLYHIKIEISLFKFY*MLFV 23
            Y  +D +V  + KC K +I   +  +  IKIE SL+K +  L++
Sbjct: 1038 YNFVDDLVIFLKKCDKTLIEGFVLPILSIKIEKSLYKGFCYLYL 1081


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +2

Query: 86  NPPDDNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRVPT--IDQCYDDD 259
           N  DD+++R FC  L  ++  P + F  +    N + +  +   Y    T   D  Y+D 
Sbjct: 263 NSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNWEVFHDFMSTYASTTTSQTDSSYND- 321

Query: 260 VVCDFEANAQFKRDRAVD-SEILSILRQRY 346
            V D   ++Q     ++D S++ SIL   Y
Sbjct: 322 -VHDIVGSSQPDYLESLDYSQLFSILYALY 350


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 384 LNAGLFGTSTSLLRKLGSLNMVTSVL 461
           +N+G++  STS L    ++NMVT  L
Sbjct: 134 VNSGMWSASTSFLPSSFAMNMVTLAL 159


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 275 EANAQFKRDRAVDSEILSILRQRYE 349
           +AN  F RD  ++  +LS L +RYE
Sbjct: 487 DANDSFSRDLRLEKILLSHLSKRYE 511


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 248 YDDDVVCDFE-ANAQFKRDRAVDSEILSILRQRYEDCMMY 364
           YDDDV C F+   A+   D  +D  I+  +R R  D ++Y
Sbjct: 254 YDDDVDCGFKIIEAREIDDLGIDG-IVKKIRDRVGDNLVY 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,660
Number of Sequences: 5004
Number of extensions: 44152
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)