Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17a08
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1029 + 22419046-22419331,22419430-22419461 34 0.10
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 32 0.41
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 1.2
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 29 3.8
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 29 3.8
01_05_0156 - 18698375-18698596 29 3.8
08_02_0009 + 11216532-11218687,11220727-11225998 28 6.6
08_02_0003 + 11180421-11180757,11180773-11185715 28 6.6
08_02_0002 + 11173365-11173512,11173528-11178470 28 6.6
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 27 8.7
>10_08_1029 + 22419046-22419331,22419430-22419461
Length = 105
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 257 DVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSA 421
D V E R++ + E I+R R C E +H KCR L D+Y A
Sbjct: 25 DPVAMLEYREHLVREKWIQIETAKIIRDRLRWCYRIEGVNHHQKCRHLVDQYLEA 79
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 311 DSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYGDL 454
D +ILS+LR D + PD A S+W A+F+ GDL
Sbjct: 320 DPQILSVLRANDADGLQLLLPDAAAAGDSVWVPVPPDPSAFFVNVGDL 367
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 143 DAPVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEI 322
D P T +QK+Y ++ RV ID ++ +VCD E ++++
Sbjct: 550 DKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDE 609
Query: 323 LSILRQRYE 349
+ + + YE
Sbjct: 610 VETINEEYE 618
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 404 DKYKSAEEAWFIKYGDLGAYGDARKAY 484
D ++ E+W +KY D Y DA+ AY
Sbjct: 341 DAKHASNESWPLKYDDYFPYADAKNAY 367
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 311 DSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYGDL 454
D +ILS+LR + + PDH K +W + S A F+ GD+
Sbjct: 264 DPQILSLLRANDVEGLQVFVPDHEGK--EMWVQVPSDPSAIFVNVGDV 309
>01_05_0156 - 18698375-18698596
Length = 73
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 422 EEAWFIKYGDLGAYGDARKAYMKQKHRMVWERR 520
EEA ++ G G+ GDAR K + R +W RR
Sbjct: 22 EEAPAMRTGRGGSDGDARDVEEKLRRRSIWTRR 54
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 170 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 349
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 1524 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 1583
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 170 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 349
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 808 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 867
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 170 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 349
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 745 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 804
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 146 APVTWFRETVVEPNQKKYP--WYHQ 214
APV W + + +P++ +YP WY+Q
Sbjct: 269 APVPWCADCMAQPDRIEYPAVWYNQ 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,586,408
Number of Sequences: 37544
Number of extensions: 278849
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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