Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17a08
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 209 HQNYRRVPTIDQCYDDDVVCDFEANAQF 292
           H +YR+ PT+ + Y   V   + + AQF
Sbjct: 363 HLHYRQPPTLSESYSSYVNSMYASGAQF 390


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 269 DFEANAQFKRDRAVDSEILSILRQRYEDCMMY 364
           D E     K+D AV+ E   ++RQ Y+D + Y
Sbjct: 18  DSETWEAIKKDAAVNMEGQFLVRQIYDDEITY 49


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 269 DFEANAQFKRDRAVDSEILSILRQRYEDCMMY 364
           D E     K+D AV+ E   ++RQ Y+D + Y
Sbjct: 18  DSETWEAIKKDAAVNMEGQFLVRQIYDDEITY 49


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 414 LYLSQRDLHLVAWSGCSYIM 355
           L+L  +D+H++ W G  ++M
Sbjct: 51  LHLLYQDVHVMIWIGFGFLM 70


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 434 TKLPQQTCTCPKETCI*LHGLVAHTSCNLHSV 339
           +K P  +C CP    +   GL+     ++HS+
Sbjct: 55  SKSPLLSCACPDGLKLLSDGLMCVEKDSIHSI 86


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 373 RPCN*MQVSLGQVQVC*GSLV 435
           RPCN + VSL    +C   LV
Sbjct: 74  RPCNYLLVSLAVSDLCVALLV 94


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 211 MIPRVLLLVWFDNS 170
           +IPR+L L W+ ++
Sbjct: 804 VIPRILYLTWYSSN 817


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 464 GDARKAYMKQKHRMVWERRNGPLSD 538
           G+   A +K   +  WERR   +SD
Sbjct: 173 GNLSHALLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 464 GDARKAYMKQKHRMVWERRNGPLSD 538
           G+   A +K   +  WERR   +SD
Sbjct: 226 GNLSHALLKDPVKEFWERRTLQISD 250


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 99  IMCLEHFAMLSTIQSMLR*HGSE 167
           ++C + F   +  QS LR HG E
Sbjct: 65  LLCQKAFDQKNLYQSHLRSHGKE 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,428
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)