Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17a06
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 210 1e-55
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 109 4e-25
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 103 2e-23
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 91 8e-20
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 89 4e-19
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 81 2e-16
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 77 2e-15
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 43 3e-05
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 39 5e-04
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 31 0.12
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 3.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 4.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 6.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.0
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 210 bits (512), Expect = 1e-55
Identities = 96/148 (64%), Positives = 120/148 (81%)
Frame = +2
Query: 134 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSTLME 313
MF+TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+ T + VVL VEKR+TS LME
Sbjct: 1 MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60
Query: 314 PTTIEKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLA 493
++EK+ E+D HI CA+SGL AD+RT++E ARV+ QNH F Y+E +ES Q++ +LA
Sbjct: 61 SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA 120
Query: 494 IQFGDSDDDSGTAMSRPFGVAVMFAGID 577
++FG+ +D MSRPFGVA++ AGID
Sbjct: 121 LRFGEGEDGEERIMSRPFGVALLIAGID 148
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 109 bits (261), Expect = 4e-25
Identities = 57/143 (39%), Positives = 87/143 (60%)
Frame = +2
Query: 149 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSTLMEPTTIE 328
S YDR ++ FSP+GRL QVEY EA++ G+TAI + +E +V+ VE++ L + +
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61
Query: 329 KIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGD 508
KI VD H+ A +GL AD+R L+++ARVE QNH + +S+E + V+ + ++
Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQ 121
Query: 509 SDDDSGTAMSRPFGVAVMFAGID 577
S G RPFGV+ + AG D
Sbjct: 122 S---GGV---RPFGVSTLIAGFD 138
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 103 bits (246), Expect = 2e-23
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 140 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSTLME-P 316
++RS YD FSPEGRL+QVEYA+EAI A+GI +G+VLA EK++TS L+E
Sbjct: 1 MSRS-YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQE 59
Query: 317 TTIEKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAI 496
+ EK+ + ++ CAV+GL AD+ L+ AR Q + +NE M E + V +L
Sbjct: 60 ESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQ 119
Query: 497 QFGDSDDDSGTAMSRPFGVAVMFAGID 577
+ + RPFGV+ ++AG D
Sbjct: 120 GY------TQYGGLRPFGVSFLYAGWD 140
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 91.5 bits (217), Expect = 8e-20
Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Frame = +2
Query: 152 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSTLMEPTTIEK 331
+Y + TFSP G+L Q+EYA+ A+ G T++GI ++GVVLA EK+ TS L ++EK
Sbjct: 4 KYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEK 63
Query: 332 IVEVDRHIACAVSGLMADSRTLVERARVECQNHW-FVYNERMSVESCAQAVSNLAIQFGD 508
+ + I SG+ D R LV+++R Q + +YNE + Q ++++ +
Sbjct: 64 VCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASV---MQE 120
Query: 509 SDDDSGTAMSRPFGVAVMFAGID 577
S G RPFGV+++ AG+D
Sbjct: 121 STQSGGV---RPFGVSLLVAGMD 140
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 89.0 bits (211), Expect = 4e-19
Identities = 55/141 (39%), Positives = 77/141 (54%)
Frame = +2
Query: 155 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSTLMEPTTIEKI 334
YD G+ FSP+GRLFQ EYA +A++ ST IGI +GV+LA+EK +TS L++P +I
Sbjct: 8 YDLGL-FFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRI 66
Query: 335 VEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSD 514
VDRHI A +G + D + +V+RAR E + Y + A + N F
Sbjct: 67 GSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLF---- 122
Query: 515 DDSGTAMSRPFGVAVMFAGID 577
+ + RPFGV A D
Sbjct: 123 --TCYSSVRPFGVMSFVATYD 141
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 80.6 bits (190), Expect = 2e-16
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Frame = +2
Query: 155 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGICTSEGVVLAVEKRITSTLMEPTTIEK 331
+DR + FSPEGRL+QVEYA +A G T++G+ + +K++ L++ +T++
Sbjct: 7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKH 66
Query: 332 IVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDS 511
+ + + I C ++G +AD+R V RAR E + M + A+ ++N+A
Sbjct: 67 VFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA------ 120
Query: 512 DDDSGTAMSRPFGVAVMFAGID 577
+ A RP GVA+ +D
Sbjct: 121 QVSTQRAAMRPLGVAMTLVAVD 142
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 76.6 bits (180), Expect = 2e-15
Identities = 47/144 (32%), Positives = 76/144 (52%)
Frame = +2
Query: 146 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSTLMEPTTI 325
R++YD T+SP+GRL QVEYA+EAIK GS +G+ + VL KR L +
Sbjct: 3 RNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQ 60
Query: 326 EKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFG 505
+K++ +D HI A++GL D+R L + E + ++ + V + +S +A +
Sbjct: 61 KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVR---RLMSKVAEKAQ 117
Query: 506 DSDDDSGTAMSRPFGVAVMFAGID 577
+ + G RP+GV + G D
Sbjct: 118 INTQEYG---RRPYGVGFLVIGYD 138
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/103 (22%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +2
Query: 233 GSTAIGICTSEGVVLAVEKRITS-TLMEPTTIEKIVEVDRHIACAVSGLMADSRTLVERA 409
G+T + G+V+ V+ R ++ L+ T++K++E++ ++ ++G AD +
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 410 RVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSDDDSGTAMS 538
+EC+ H E +SV + ++ +SN+ + GT ++
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLA 163
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 39.1 bits (87), Expect = 5e-04
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +2
Query: 224 IKLGSTAIGICTSEGVVLAVEKRIT-STLMEPTTIEKIVEVDRHIACAVSGLMADSRTLV 400
I++G+T + +GV+LA + R T + +K+ ++ +I C SG AD++T+
Sbjct: 21 IRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVA 80
Query: 401 ERARVECQNHWFVYNERMSVESCAQAVSNLAIQ 499
+ + + + SV + A S + Q
Sbjct: 81 DLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQ 113
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.1 bits (67), Expect = 0.12
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 218 EAIKLGSTAIGICTSEGVVLAVEKRITS-TLMEPTTIEKIVEVDRHIACAVSGLMADSRT 394
+A G+T +G+ + +VL + R T+ ++ +K+ + +I CA +G AD+
Sbjct: 30 KATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEF 89
Query: 395 LVERARVECQNHWFVYNERMSV 460
+ + H N + V
Sbjct: 90 VTSMISSNIELHSLYTNRKPRV 111
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 567 ANITATPNGRDMAVPLSSSLS-PNCIAKLETA 475
+ +TATP+ + PLSS S PN I+ L T+
Sbjct: 345 STLTATPSSLENLYPLSSRRSVPNLISSLGTS 376
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -1
Query: 207 STWNSLPSGLNVLTPRSYSERVRNILLLGYSR 112
++WN++PSG N L+ + ++ ++ L +S+
Sbjct: 521 ASWNNVPSGDNTLSTEALQDKKKSEELTAHSK 552
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 123 LIVKCFSHVPSMIAASTHSAL 185
+ KCFS + + A ST+SAL
Sbjct: 559 MFCKCFSEMSPLFACSTYSAL 579
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 8.0
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -1
Query: 291 LFSTAKTTPSEVQMPIAVE-PSLIASMAY--STWNSLPSGLNVLTPRSYSERVRNILLLG 121
LFS +T P+ + + + P + + ST+ ++ S + + ER+RN+L +
Sbjct: 318 LFSDTRTRPASYALALIITVPYEYDEIVHPVSTYYTMLSNFTLSLQKEIDERIRNLLFVS 377
Query: 120 YS 115
S
Sbjct: 378 LS 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,074
Number of Sequences: 5004
Number of extensions: 55934
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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