Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17a04
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-6|CAE54930.1|  532|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z75714-5|CAB00065.2|  581|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF024491-2|AAT92081.1|  765|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF024491-1|AAB70312.2|  850|Caenorhabditis elegans Hypothetical ...    27   7.1  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U41019-5|ABN43092.1|  134|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z75714-6|CAE54930.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC434.9b protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 FYMTPVKGEIPVHLLEVIVVQ-RLEYLKLVLKGENITYNEYLIED 427
           F+ TP K     H  +++V + R+E+L  VLK  NI+Y + +IED
Sbjct: 62  FWQTPSKVG---HRADIMVDEDRMEWLDSVLKNSNISY-DVIIED 102


>Z75714-5|CAB00065.2|  581|Caenorhabditis elegans Hypothetical
           protein ZC434.9a protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 296 FYMTPVKGEIPVHLLEVIVVQ-RLEYLKLVLKGENITYNEYLIED 427
           F+ TP K     H  +++V + R+E+L  VLK  NI+Y + +IED
Sbjct: 62  FWQTPSKVG---HRADIMVDEDRMEWLDSVLKNSNISY-DVIIED 102


>AF024491-2|AAT92081.1|  765|Caenorhabditis elegans Hypothetical
           protein C24A1.3b protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 301 IKYRHRYKLALTLHSSINDHNVLIH 227
           ++Y H       +H  +N HN+LIH
Sbjct: 627 MRYLHESAAKPVIHRDLNSHNILIH 651


>AF024491-1|AAB70312.2|  850|Caenorhabditis elegans Hypothetical
           protein C24A1.3a protein.
          Length = 850

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 301 IKYRHRYKLALTLHSSINDHNVLIH 227
           ++Y H       +H  +N HN+LIH
Sbjct: 630 MRYLHESAAKPVIHRDLNSHNILIH 654


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 546  LVRRRNNSVSVFFKNIKNSLLPFNIATIQSVK 451
            ++RR+NN + VFF N+K       +  ++S K
Sbjct: 1012 ILRRKNNFIPVFFHNLKGYDSHLIVGCLESTK 1043


>U41019-5|ABN43092.1|  134|Caenorhabditis elegans Hypothetical
           protein C04E7.5 protein.
          Length = 134

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +2

Query: 149 KVKQRKHSKFSLKWNTCDYILFGLIFMY 232
           K+ ++KH   + ++++CDY++ G+  M+
Sbjct: 104 KMVEKKHYDGTTQFSSCDYVIMGIKSMF 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,634
Number of Sequences: 27780
Number of extensions: 216069
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)