Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16p12
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 164 IQCYPYLVNIFYILCTGLVHNYR 232
           IQ  PY +NIF +    L+  YR
Sbjct: 156 IQACPYTLNIFDLTSDKLLRQYR 178


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 80  FFNYFQHYIVQMYLK*CRQVTLS 148
           F   F +Y++Q+Y+  C  V +S
Sbjct: 237 FKREFSYYLIQIYIPCCMLVIVS 259


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 80  FFNYFQHYIVQMYLK*CRQVTLS 148
           F   F +Y++Q+Y+  C  V +S
Sbjct: 237 FKREFSYYLIQIYIPCCMLVIVS 259


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 535 LHSSFLAGKS*AFIS 491
           LH+  LAGK+ AFI+
Sbjct: 3   LHNKTLAGKALAFIA 17


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 535 LHSSFLAGKS*AFIS 491
           LH+  LAGK+ AFI+
Sbjct: 3   LHNKTLAGKALAFIA 17


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 137 LVCTILGTSALCNVESS*RMMNVV*NLHCHFD 42
           L   I+G + +C+  +   ++N++ NL+  FD
Sbjct: 493 LFSDIVGFTEICSTATPMMVINMLQNLYEQFD 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,797
Number of Sequences: 438
Number of extensions: 3409
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)