Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16p11
         (520 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens We...    41   0.002
AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicas...    41   0.002
AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein.      41   0.002
AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein.                  41   0.002
AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein.                  41   0.002

>L76937-1|AAC41981.1| 1432|Homo sapiens protein ( Homo sapiens
           Werner syndrome gene, complete cds. ).
          Length = 1432

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 308 CDEXVXELRRRCXDYXALGFDCEW--VTDHGKRKPVALVQLXSSDGLXCLFRLXSMETXP 481
           C     ++     D   +GFD EW  + + GK   VAL+QL  S+    LF + SM   P
Sbjct: 62  CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121

Query: 482 NSLKDLLXDXXI 517
             LK LL +  +
Sbjct: 122 QGLKMLLENKAV 133


>AY818673-1|AAX21098.1| 1432|Homo sapiens Werner syndrome helicase
           protein.
          Length = 1432

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 308 CDEXVXELRRRCXDYXALGFDCEW--VTDHGKRKPVALVQLXSSDGLXCLFRLXSMETXP 481
           C     ++     D   +GFD EW  + + GK   VAL+QL  S+    LF + SM   P
Sbjct: 62  CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121

Query: 482 NSLKDLLXDXXI 517
             LK LL +  +
Sbjct: 122 QGLKMLLENKAV 133


>AY442327-1|AAR05448.1| 1432|Homo sapiens Werner syndrome protein.
          Length = 1432

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 308 CDEXVXELRRRCXDYXALGFDCEW--VTDHGKRKPVALVQLXSSDGLXCLFRLXSMETXP 481
           C     ++     D   +GFD EW  + + GK   VAL+QL  S+    LF + SM   P
Sbjct: 62  CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121

Query: 482 NSLKDLLXDXXI 517
             LK LL +  +
Sbjct: 122 QGLKMLLENKAV 133


>AF181897-1|AAF06162.1| 1432|Homo sapiens WRN protein.
          Length = 1432

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 308 CDEXVXELRRRCXDYXALGFDCEW--VTDHGKRKPVALVQLXSSDGLXCLFRLXSMETXP 481
           C     ++     D   +GFD EW  + + GK   VAL+QL  S+    LF + SM   P
Sbjct: 62  CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121

Query: 482 NSLKDLLXDXXI 517
             LK LL +  +
Sbjct: 122 QGLKMLLENKAV 133


>AF091214-1|AAC63361.1| 1432|Homo sapiens WRN protein.
          Length = 1432

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 308 CDEXVXELRRRCXDYXALGFDCEW--VTDHGKRKPVALVQLXSSDGLXCLFRLXSMETXP 481
           C     ++     D   +GFD EW  + + GK   VAL+QL  S+    LF + SM   P
Sbjct: 62  CSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFP 121

Query: 482 NSLKDLLXDXXI 517
             LK LL +  +
Sbjct: 122 QGLKMLLENKAV 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,968,544
Number of Sequences: 237096
Number of extensions: 685743
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)