Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16p08
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 31 0.061
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 26 2.3
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 4.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 5.3
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 5.3
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 24 7.0
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 24 7.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 24 7.0
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 24 7.0
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 24 9.3
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 31.1 bits (67), Expect = 0.061
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 294 NFLRYSLLPTASTRERXRLXVRSALGRVHVICTVVDRXV 178
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 2.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 148 PKDYNPNGNGYXPIDNGAYYVDPPQGRPYXKPT 246
PK PN N P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 3.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +1
Query: 154 DYNPNG-NGYXPIDNGAYYVDPPQG---RPYXKPTPFPG 258
DYN N N Y PI N Y+++ G PY PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 103 NGYEPIDNRPYIVNPPKDYNPNGNGYXPIDNGAYYVDPPQGRPYXKPTPFP 255
N Y PI VNP Y P+G G+ V PP+ +P + P P
Sbjct: 982 NPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPK-QPANRVVPLP 1023
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 138 DVRAVVNRFVAVSLSXG 88
+VR V NRFVAV L G
Sbjct: 1056 NVRRVTNRFVAVKLDCG 1072
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 5.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 70 LALLAMAXAQGNGYEPIDNRPYIVNPPKDYNPNGNGYXPIDNGAY 204
LAL ++ Q Y I+ P N P +N N N + I AY
Sbjct: 86 LALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAFL-ISTNAY 129
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 97 QGNGYEPIDNRPYIVNPPKDYNPNGNGY 180
QG G + D PY ++P Y P G Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 151 KDYNPNGNGYXPIDNGAYYVDPPQGRP 231
K Y +G G P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +3
Query: 192 QRCILRGPSPRPTLXQAYXFPWCSRWEVKNIL 287
++C R P RP PW + + K I+
Sbjct: 1284 EQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 210 GPSPRPTLXQAYXFPWCSRWEVKNI 284
GPSP P L +A + + S W + ++
Sbjct: 439 GPSPAPKLGEAKYWTYTSVWNLLDL 463
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 225 PTLXQAYXFPWCSRWEVKNILENX*RNSVLTI 320
P L Y + WC+ E+KN L +SV I
Sbjct: 232 PNLQNVYDWVWCTYDELKNKLSPSSWDSVKNI 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,132
Number of Sequences: 5004
Number of extensions: 22956
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -