Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16p01
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.045
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.18
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.32
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.42
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 0.42
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 0.56
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 25 1.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 2.2
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 25 3.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 3.0
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 24 3.9
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 3.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 6.9
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 23 6.9
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 23 9.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 23 9.1
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 23 9.1
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.7 bits (66), Expect = 0.045
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 157 RVYVGGLVEGIKKEXLEREFDKYGKLNSV 243
R+YVGGL I+ LE F ++G ++++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 28.7 bits (61), Expect = 0.18
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 142 SSGGTRVYVGGLVEGIKKEXLEREFDKYGKLNSVWVALXPPGFAFIEF 285
++ V++G L ++ +E F K+GK+ + + L AF+ F
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHF 341
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.9 bits (59), Expect = 0.32
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 160 VYVGGLVEGIKKEXLEREFDKYGKLNSVWVALXPPGFAFIEFE 288
+YV L G + F YG + +W+ L P A + +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYE 43
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 0.42
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 248 TQTEFSFPYLSNSRSXSSFLIPSTRPPTYTRVPPE 144
T+ +FPYL NSR+ S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRA-RSVALSEYHQPSNVFVPPE 362
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 284 NSMKAKPGGXSATQTEFSFPYLSNSRSXSSFLIPSTRPPTYTRVP 150
+S+ S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 793 SSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 0.56
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 160 VYVGGLVEGIKKEXLEREFDKYGKLNSVW 246
+YVG + + E + + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 25.4 bits (53), Expect = 1.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 160 VYVGGLVEGIKKEXLEREFDKYGKLNSVWVAL-----XPPGFAFIEFE 288
+++ L K+ +EREF +YG + + V G+AF+ FE
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 2.2
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 160 VYVGGLVEGIKKEXLEREFDKYGKLNSVWVAL-----XPPGFAFIEFE 288
V+VG L + + L +EF++YG + V + G+ +++FE
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 193 KEXLEREFDKYGKLNSVWVAL 255
KE +E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 24.6 bits (51), Expect = 3.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 160 VYVGGLVEGIKKEXLEREFDKYGKLNSVWVAL----XPPGFAFIEFE 288
+YV G +G++ L EF+ +G L + + FAF+E+E
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYE 55
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 136 TMSSGGTRVYVGGLVEGIKKE 198
TM+ GGTRV GG+ I +
Sbjct: 785 TMTGGGTRVKKGGMSSAITSD 805
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 3.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 287 SNSMKAKPGGXSATQTEFSFPYLSNSRSXSSFLIPSTRPPTYTR 156
S S++ + G A +TE Y N +S +P PP R
Sbjct: 2051 SGSLRRQKQGLMAYETESFRDYSPNEEIDASAKLPMDMPPVRVR 2094
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 160 VYVGGLVEGIKKEXLEREFDKYGKLNSVWVALXPPGFAFIEFE 288
++VG L G+ + F YG ++S+ + L AF+ F+
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFD 630
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 163 YVGGLVEGIKKEXLEREFDKYGKLNSVWVALXP 261
Y G LV+G +K +E D +LNS+ + P
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSP 148
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 162 HASTTRTHGLVLFMKIXLKXIYVN 91
H T T+G +F K +K +Y+N
Sbjct: 252 HILRTNTNGSKIFTKSPVKNLYLN 275
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 148 GGTRVYVGGLVEGIKKEXLEREFDKYGK 231
GG +++ G+V+ E +ERE + GK
Sbjct: 255 GGNILFLTGMVDKRTMEKIEREAKEAGK 282
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 219 IELAFEXFLLDSLDETADVHASTTRTHGLV 130
I+ F+ L +ET ++HA T TH V
Sbjct: 638 IDEQFQNLGLQENEETDNLHACRTTTHSSV 667
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,629
Number of Sequences: 5004
Number of extensions: 13481
Number of successful extensions: 44
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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