Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16p01
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   5.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   7.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        19   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.4  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 230 FPYLSNSRSXSSFLIP 183
           FPYL       +FLIP
Sbjct: 7   FPYLCYKNGGGAFLIP 22


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  FLFXNVFKISQNR 82
           FL+ N+FK  +NR
Sbjct: 361 FLYYNIFKALRNR 373


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 232 LNSVWVALXPPGFAF 276
           L  VW+ + PPG  F
Sbjct: 641 LTLVWMIIEPPGTRF 655


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 232 LNSVWVALXPPGFAF 276
           L  VW+ + PPG  F
Sbjct: 731 LTLVWMIIEPPGTRF 745


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 230 FPYLSNSRSXSSFLIPSTRPPTYTRVPPELM 138
           FPYL       +F++P         VP  LM
Sbjct: 45  FPYLCYKNGGGAFMVPYFIALALAGVPMFLM 75


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 230 FPYLSNSRSXSSFLIPSTRPPTYTRVPPELM 138
           FPYL       +F++P         VP  LM
Sbjct: 98  FPYLCYKNGGGAFMVPYFIALALAGVPMFLM 128


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 205 EREFDKYGK 231
           ERE+ KYGK
Sbjct: 275 EREYRKYGK 283


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 193 KEXLEREFDKYGKL 234
           ++  +R F+KYG+L
Sbjct: 182 EQEAKRRFEKYGQL 195


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 191 LIPSTRPPTYTRVPPEL 141
           L+ +   P YT  PP L
Sbjct: 201 LVRARETPNYTACPPTL 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,267
Number of Sequences: 438
Number of extensions: 753
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)