Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16o06
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 421 PGLSFSAPPGYLRPTTRD 474
           PG+SF  P G  RP  R+
Sbjct: 468 PGMSFGEPLGLRRPQERE 485


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 96  HQWARVGK*LMGTSNLSLMA*Q 161
           ++W RVGK L G   L++ A Q
Sbjct: 553 YEWVRVGKYLSGELRLNMSAIQ 574


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 62  FSEKQLSQIVKSS 100
           FS+KQ++ +VKSS
Sbjct: 316 FSDKQIASVVKSS 328


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +1

Query: 439 APPGYLRPTTRDSHHYVHR 495
           +P GY++P + +    +HR
Sbjct: 323 SPYGYVKPISPEQEELIHR 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,858
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)