Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16n13
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.27 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.62 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.62 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.5  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 402 DDVVNCRLCGKGFVSQIALTNHAR 473
           +D   C +CGK F     LT H R
Sbjct: 89  EDPYRCNICGKTFAVPARLTRHYR 112



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 417 CRLCGKGFVSQIALTNHAR 473
           C+ CGKGF     L  H R
Sbjct: 206 CKACGKGFTCSKQLKVHTR 224



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 387 IVNDEDDVVNCRLCGKGFVSQIALTNHAR 473
           + N E+    C LC K F  +    +H R
Sbjct: 54  LTNIEEKTYQCLLCQKAFDQKNLYQSHLR 82


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 417 CRLCGKGFVSQIALTNHARMEHID 488
           C+LCGK   S+ +L  H   +H +
Sbjct: 8   CQLCGKVLCSKASLKRHVADKHAE 31


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +3

Query: 291 HTVKYQDNSATIMADEERFVNVVPYSKIKQEIIVNDEDDVVNCR-LCGKGFVSQIALTNH 467
           H++  + N+   +   E  +   P  + + EI+++DE D V+ R L  KG    I + N 
Sbjct: 259 HSILNRTNNIFELVTVEPILTERPSDRQRNEILLSDELDSVDDRTLRLKG--QMIYMDNW 316

Query: 468 ARMEHIDSYATGDPSIWTETKIFINN 545
             M ++ +    D +    T ++IN+
Sbjct: 317 KMMMYLGTPVMPDLNALIATGLYIND 342


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 162 KIISLMLFTLNLSNDIYKNTKFSRL 88
           KIIS +  + N SN+ Y N  + +L
Sbjct: 302 KIISSLSNSCNYSNNYYNNNNYKKL 326


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 513 YLDHQLRKNLCAPFERGLSVLFDLQNL 433
           Y+D++ R N    F R LSVL +L+ L
Sbjct: 511 YVDNRRRPNPGTVFARLLSVLTELRTL 537


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 DDVVNCRLCGKGFVSQIALTNHARMEH 482
           D +  C  C + + ++ +LT H  ++H
Sbjct: 33  DTLYVCEFCNRRYRTKNSLTTHKSLQH 59


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 417 CRLCGKGFVSQIALTNHAR 473
           C LCGK F     L  H R
Sbjct: 45  CHLCGKAFSRPWLLQGHIR 63


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 417 CRLCGKGFVSQIALTNHARMEH 482
           C LC K F +  +L NH  + H
Sbjct: 404 CALCHKVFRTLNSLNNHKSIYH 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,308
Number of Sequences: 438
Number of extensions: 2947
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)