Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m24
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    29   0.023
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    27   0.091
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.37 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   0.85 

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 0.023
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 YNDKIFIYNNFYNSXMFYKKYIL 230
           YN+K    NN YN  ++YK YI+
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYII 122


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 0.091
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 162 YNDKIFIYN-NFYNSXMFYKKYIL 230
           YN+  + YN N YN  ++YK YI+
Sbjct: 324 YNNNNYKYNYNNYNKKLYYKNYII 347


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 165 NDKIFIYNNF--YNSXMFYKKYIL 230
           N K   YNN+  YN  ++YK YI+
Sbjct: 88  NYKYSNYNNYNNYNKKLYYKNYII 111


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 183 YNNFYNSXMFYKKYIL 230
           YNN YN  ++YK YI+
Sbjct: 338 YNN-YNKKLYYKNYII 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,546
Number of Sequences: 438
Number of extensions: 596
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)