Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m23
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    35   0.010
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.056
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   3.7  
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    25   8.5  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +2

Query: 350  EHFEIHNLKSRTGTNVDSDSLSKVLRGLGFSVTVLHNLRAEDINRYIXQISEMDH--TDN 523
            E F    +K++T T   ++ L K  + L  ++  LH+++  +INR + ++ +  +  TD 
Sbjct: 1088 ERFRRQLIKTKT-TGKANEDLGKYAKALDVAIMQLHSMKMNEINRIVDELWKQTYCGTDI 1146

Query: 524  DCLLVAVLSHGELGMLY 574
            D +L+   S G+    Y
Sbjct: 1147 DTILIRSDSEGKGNRTY 1163


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 32.3 bits (70), Expect = 0.056
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +2

Query: 269 AKMPVERYAHYYNMNHNNRGMAIIFNHEHFEIHNLKSRTGTNVDSDSLSKVLRGLGFSVT 448
           ++  +ERY HYYN   N+   A + +HE +E H  K  T   VDS+     ++ L  +V 
Sbjct: 352 SRASLERYLHYYNRFANHEQSAKL-DHELYE-HTHKRMTQMQVDSNLSWVEVQFLKNAVD 409

Query: 449 VLHNLR 466
           +L   R
Sbjct: 410 ILFQCR 415


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 107 GRVQLFARLLRFVIFKMADEEKKNNGSGTEQRKNGNEDEGDAWGS 241
           G V  F+ LLRFV    A E K    SGT+  K G+      W S
Sbjct: 231 GHVYCFSCLLRFVETPTAAEVKAAETSGTKIVKCGHRSCPICWDS 275


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 155  MADEEKKNNGSGTEQRKNGNEDEGD 229
            M DEE  NNG+ T+    GNE +G+
Sbjct: 1089 MLDEE--NNGNNTKPEITGNESDGE 1111


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 173 KNNGSGTEQRKNG-NEDEGDAWGSHGSSQGRRYAKM 277
           KN G G + R+ G NE+E +      + +G+ YA++
Sbjct: 3   KNKGKGGKNRRRGKNENENEKRELTYAEEGQMYAQV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,620
Number of Sequences: 5004
Number of extensions: 45166
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)