Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m23
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +2

Query: 161 DEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYAHYYNMNHNNR 325
           ++ K+N     + ++NGN   G+    +  +  R+      +R  +  N N NN+
Sbjct: 476 NDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDN---KRNGNRQNDNQNNQ 527


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 158 ADEEKKNNGSGTEQRKNGNEDEGDAWG-SHGSSQGRRYAKMPVERYAHY 301
           A     NN +      NG  D G+  G S+ ++ G  +    +  Y H+
Sbjct: 237 ASNNNNNN-NNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHH 284



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/40 (22%), Positives = 13/40 (32%)
 Frame = +2

Query: 158 ADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKM 277
           A+    NN +      N N    D    +G+S       M
Sbjct: 233 ANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDM 272


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 161 DEEKKNNGSGTEQRKNGNEDE 223
           D  +KNN      +KN N+++
Sbjct: 431 DNNQKNNKKNANNQKNNNQND 451


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 109 TSVNKMEFLIYVDVVKMESVKNNNKNY 29
           T +NK+E    V VV +E   N +K Y
Sbjct: 184 TKINKIEEHDTVLVVNIEKSGNESKKY 210


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 143 VIFKMADEEKKNNGSGTEQRKNGNEDE 223
           V FK+ D +  + G   E   NG  DE
Sbjct: 351 VRFKVHDPKAHSKGGTLENTINGRADE 377


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 143 VIFKMADEEKKNNGSGTEQRKNGNEDE 223
           V FK+ D +  + G   E   NG  DE
Sbjct: 351 VRFKVHDPKAHSKGGTLENTINGRADE 377


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 109 TSVNKMEFLIYVDVVKMESVKNNNKNY 29
           T +NK++    V VV +E  +N +K Y
Sbjct: 173 TKINKIKEHDTVLVVNIEKSENESKKY 199


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 143 VIFKMADEEKKNNGSGTEQRKNGNEDE 223
           V FK+ D +  + G   E   NG  DE
Sbjct: 289 VRFKVHDPKAHSKGGTLENTINGRADE 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,556
Number of Sequences: 438
Number of extensions: 3376
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)