Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m22
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.5  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   9.5  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 161 IKTTIICT---MNKSFIKSHIFTLQENTVHIIK*LERD 265
           + TTI+ T   +NK F +  +F +   T+H I  ++ D
Sbjct: 81  VSTTIVPTTQEINKPFKRLELFNITTTTIHSIHSIDGD 118


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 136 KYTKLCIINKNYNNMYN 186
           KY+     N NYNN YN
Sbjct: 90  KYSNYNNYNNNYNNNYN 106



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 160 NKNYNNMYN 186
           N NYNN YN
Sbjct: 102 NNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 136 KYTKLCIINKNYNNMYN 186
           KY+     N NYNN YN
Sbjct: 90  KYSNYNNYNNNYNNNYN 106



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 160 NKNYNNMYN 186
           N NYNN YN
Sbjct: 102 NNNYNNNYN 110


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 160 NKNYNNMYNE*IFH*ITY 213
           N NYNN  N+ +++ I Y
Sbjct: 315 NNNYNNYNNKKLYYNINY 332


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 160 NKNYNNMYN 186
           N NYNN YN
Sbjct: 331 NNNYNNNYN 339


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 160 NKNYNNMYN 186
           N NYNN YN
Sbjct: 340 NNNYNNNYN 348


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 379 NTNFIPTKNHQI 414
           ++NF+P K HQ+
Sbjct: 151 SSNFLPNKMHQV 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,277
Number of Sequences: 438
Number of extensions: 3116
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)