Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16m21
(287 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068500-1|AAH68500.1| 658|Homo sapiens large subunit GTPase 1 ... 81 5e-16
BC040119-1|AAH40119.1| 649|Homo sapiens LSG1 protein protein. 81 5e-16
BC015042-1|AAH15042.1| 648|Homo sapiens Unknown (protein for IM... 81 5e-16
AK002163-1|BAA92116.1| 642|Homo sapiens protein ( Homo sapiens ... 81 5e-16
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 29 2.7
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 29 2.7
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 29 2.7
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 29 2.7
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 29 2.7
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 29 2.7
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 29 2.7
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 29 2.7
AB023185-1|BAA76812.1| 527|Homo sapiens KIAA0968 protein protein. 28 6.3
>BC068500-1|AAH68500.1| 658|Homo sapiens large subunit GTPase 1
homolog (S. cerevisiae) protein.
Length = 658
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/61 (60%), Positives = 51/61 (83%)
Frame = +1
Query: 100 SLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAEL 279
SLGRAL++ + ++R+ +H + + LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TAEL
Sbjct: 11 SLGRALMRHQTQRSRSHRHTD--SWLHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAEL 68
Query: 280 A 282
A
Sbjct: 69 A 69
>BC040119-1|AAH40119.1| 649|Homo sapiens LSG1 protein protein.
Length = 649
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/61 (60%), Positives = 51/61 (83%)
Frame = +1
Query: 100 SLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAEL 279
SLGRAL++ + ++R+ +H + + LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TAEL
Sbjct: 11 SLGRALMRHQTQRSRSHRHTD--SWLHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAEL 68
Query: 280 A 282
A
Sbjct: 69 A 69
>BC015042-1|AAH15042.1| 648|Homo sapiens Unknown (protein for
IMAGE:3920630) protein.
Length = 648
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/61 (60%), Positives = 51/61 (83%)
Frame = +1
Query: 100 SLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAEL 279
SLGRAL++ + ++R+ +H + + LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TAEL
Sbjct: 11 SLGRALMRHQTQRSRSHRHTD--SWLHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAEL 68
Query: 280 A 282
A
Sbjct: 69 A 69
>AK002163-1|BAA92116.1| 642|Homo sapiens protein ( Homo sapiens
cDNA FLJ11301 fis, clone PLACE1009908, weakly similar to
HYPOTHETICAL GTP-BINDING PROTEIN IN SEH1-PRP20
INTERGENIC ).
Length = 642
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/61 (60%), Positives = 51/61 (83%)
Frame = +1
Query: 100 SLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAEL 279
SLGRAL++ + ++R+ +H + + LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TAEL
Sbjct: 11 SLGRALMRHQTQRSRSHRHTD--SWLHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAEL 68
Query: 280 A 282
A
Sbjct: 69 A 69
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1023
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 107 GEPSSKIDSLKIATKNMSKTIP 172
G+PSSK+ K TK M KTIP
Sbjct: 987 GQPSSKMTPSKNITKKMDKTIP 1008
>AB023185-1|BAA76812.1| 527|Homo sapiens KIAA0968 protein protein.
Length = 527
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = -1
Query: 287 LCASSAVERNSWSEDSAVTDWRFKRPQSYPSFTSVVWSMVLSSTCFLLRFLENLSLMRAL 108
LC SA WS S R PS T + + + + TC RF E L L
Sbjct: 11 LCLHSAARAGKWSLGSGAEQQRLSPGPPVPSLTCLPSARMATITC--TRFTEEYQLFEEL 68
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,336,749
Number of Sequences: 237096
Number of extensions: 779188
Number of successful extensions: 1826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1822
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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