Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m16
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...   126   3e-30
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...   122   4e-29
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   3.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   6.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.7  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.7  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   6.7  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score =  126 bits (305), Expect = 3e-30
 Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 4/188 (2%)
 Frame = +2

Query: 125 NAEVPPEFLIKHPLQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 301
           NAE    F+  HPLQ++W+LWF     +   W + L E+ +F TVE+FW ++  I   S 
Sbjct: 55  NAETA--FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASM 112

Query: 302 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE- 478
           L    DY+ F +GIRP WED  N  GG+W  + + K + ++LD  WL +VL  IGE  + 
Sbjct: 113 LPAKSDYSYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDP 170

Query: 479 NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTM 652
              E+ G V N+R    +IA+WT +   +    +IG + KE LGI  K  I +  H D+ 
Sbjct: 171 TGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDSS 230

Query: 653 VKHSSATK 676
              S   K
Sbjct: 231 KAGSMRAK 238


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score =  122 bits (295), Expect = 4e-29
 Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
 Frame = +2

Query: 146 FLIKHPLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 322
           F +KHPL   W+LWF         W E    + TF++VE+FW ++++I   S L    DY
Sbjct: 34  FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDY 93

Query: 323 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICG 499
           + F++G+RP WED  NK GG+W     K +    LD  WL  VL  IGE  +    E+ G
Sbjct: 94  SFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMG 152

Query: 500 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTMVKHSSAT 673
            V+N+R    ++A+WT     +   +EIG + K+ L +     I F  H D+    S+  
Sbjct: 153 VVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGSTRA 212

Query: 674 K 676
           K
Sbjct: 213 K 213


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 548 ADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHS 664
           A++ K  +T+     +K      GK G ++  D M+KH+
Sbjct: 63  ANSTKSTSTVTTASPIKYDSSFVGKTGGEIFHDMMLKHN 101


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -3

Query: 504  TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 325
            T+P +S    + S I   +TSN N+  S    F S + +        +S+ I +   LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856

Query: 324  A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 208
              S  W +S    + +YN   SSTV    ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 630 SKYTETQWLSIVLRPRIYTLV*FWHYISCLYLQIY 734
           +K  +TQWL+  L      ++ +W  +   Y+ +Y
Sbjct: 80  NKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVY 114


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 146 FLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTF 247
           F I+  L+   +  FY N +NK W  N  +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 153 SSTRYKTSGVSGFTTMTETKHG 218
           ++T Y TSG  GFTT   T+ G
Sbjct: 647 TTTEYTTSGSVGFTTTLATQSG 668


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 341 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 451
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 682 IHWFSFGITYLVCICRFMGRT 744
           +H +  GIT L+C  + +GRT
Sbjct: 164 LHCYHHGITALLCFTQLLGRT 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,692
Number of Sequences: 5004
Number of extensions: 62304
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)