Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m13
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.4  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.9  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    26   5.9  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.8  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 384  DLRSWYTASNYIHCISVCLIIRCSHHLQAAI-FYW 283
            +L  + +A++ I C+++ +  +C  HL +++  YW
Sbjct: 1386 NLMDYSSATDRIRCLAIHIYYQCLRHLSSSVRSYW 1420


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 498 CFLKTRRRIAAVSVANKTPHVAMSSCFFYCYKTQAHGV 385
           C L   RR A V    KT       CF+Y ++T+ H V
Sbjct: 6   CQLCNERRPALVRP--KTGQKICKECFYYVFETEIHNV 41


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 414  YCYKTQAHGVDLRSWYTASNYIHCIS--VCLIIRCSHHLQAAI 292
            YCY+   +   ++SW +  +YI+     +C  +  + +L++ I
Sbjct: 2005 YCYEGPINNYMIKSWGSRLSYIYAFKPLICSCVPATEYLESNI 2047


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  FSITSVINLVASESCFYQRCLGCYPQEM 180
           F +T  I  +A  SC +  CL  +P+E+
Sbjct: 257 FQVTGEIMKLAKPSCKFMHCLPRHPEEV 284


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 589 INSFLMHYCFSHTTIVCVKYELC 657
           I S  +H+ F H TI C  Y LC
Sbjct: 55  IYSHTLHF-FHHFTIACYHYSLC 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,031
Number of Sequences: 5004
Number of extensions: 61609
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)