Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m13
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.68 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.68 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 159 KASLIETTFRGN*INHRRNTENKQNHF 79
           K  +I   + G  +NH  N ENK N+F
Sbjct: 197 KEYIIPANYSGWYLNHDYNLENKLNYF 223


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 401 PRHTESICARGI--QPRITSIVFPYVLSSGVATIFKQLYSIGIL 276
           PR    I A G+  +P+I S+  PY+      T+F++   +G L
Sbjct: 628 PRIQTYIMALGMIGEPKILSVFEPYLEGKQQMTVFQRTLMVGSL 671


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 413 TAIRPRHTESICARGIQPRITSIVFPYV 330
           T   P+H+ S  +     R TS ++PYV
Sbjct: 65  TGSSPQHSGSSASTSPAARTTSSMYPYV 92


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 583 LFINSFLMHYCFSHTTIVCVKYE 651
           L I++FLM +C S   ++   YE
Sbjct: 94  LAISNFLMMFCMSPPMVINCYYE 116


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 156 PWLLSTRNDFSWLVSRVSPKKLGVGPMGSKLWSPATK 266
           PWL   RN    L+  +  +KLG    G   W P+ +
Sbjct: 545 PWLPLLRNRLDTLIYPIIRRKLGSALGG---WHPSDR 578


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 LFINSFLMHYCFSHTTIVCVKYE 651
           L I+ FLM +C S   ++   YE
Sbjct: 60  LAISDFLMMFCMSPPMVINCYYE 82


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 159 KASLIETTFRGN*INHRRNTENKQNHF 79
           K  +I   + G  +NH  N ENK  +F
Sbjct: 197 KEYIIPANYSGWYLNHDYNLENKLIYF 223


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 414 YCYKTQAHGVDLRSWYTASNYIHCISVCLIIRCSHHL 304
           YC     H    R  Y  +  I  +++ +I  CSHHL
Sbjct: 542 YCVACGLH----RDTYIHAQQIAWMALKMIQACSHHL 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,814
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)