Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16m08
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 79 6e-16
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 72 9e-14
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 70 3e-13
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 62 7e-11
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 54 3e-08
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 38 0.001
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.091
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 29 0.49
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 7.9
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 79.0 bits (186), Expect = 6e-16
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +3
Query: 267 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 446
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 447 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 626
QL+ ++A L+ EN+ L +T E GK ++ AE +V ++ + GD +
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVAPS 140
Query: 627 IAKDMD-THSYKVPLGVVGGVAXFNF 701
+ + S K P+GV + +NF
Sbjct: 141 SLQSQNFLISIKQPVGVSALITPWNF 166
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 71.7 bits (168), Expect = 9e-14
Identities = 39/145 (26%), Positives = 72/145 (49%)
Frame = +3
Query: 267 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 446
YI G++V + + ++ NP NE + V + + +E A+ A A+ ++ S + R
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKERY 86
Query: 447 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 626
++ ++ L+ EN LA +T E GK + DA+G+V+ + ++ GDS +
Sbjct: 87 AILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSSMS 146
Query: 627 IAKDMDTHSYKVPLGVVGGVAXFNF 701
+ K P+GVVG + +NF
Sbjct: 147 SNPQNRIITIKQPVGVVGIITPWNF 171
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 70.1 bits (164), Expect = 3e-13
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = +3
Query: 264 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 443
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 444 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHCCSITSLQLGDSI 620
+L+ K A L ++ LAA + GK +++A GDV I + +C G I
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVI 140
Query: 621 QNIAKDMDTHSYKVPLGVVGGVAXFNF 701
+ + ++ + P+GV G + +N+
Sbjct: 141 PTGPEKL-AYAKRTPIGVCGQIVPWNY 166
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 62.1 bits (144), Expect = 7e-11
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Frame = +3
Query: 264 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 434
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 435 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGD 614
R + + + A + +N LA+ T + GK+I A GDV + G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 615 SIQNIAKDMDTHSYKVPLGVVGGVAXFNF 701
+I+ K ++ P+GV G + +NF
Sbjct: 145 TIETDIKRF-AYTRHEPIGVCGQIIPWNF 172
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 53.6 bits (123), Expect = 3e-08
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Frame = +3
Query: 249 APTTKLYIDGQYVD--SKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 416
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 417 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 596
W+K R ++ K A+++RE + LA T GK A D+ E+ +
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137
Query: 597 SLQLGDSIQNIAKDMDTHSY--KVPLGVVGGVAXFNF 701
+ + ++ + P GV+G + +NF
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNF 174
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 324 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 503
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 504 KITEEQGKTIADAE-GDVLRGIQSV 575
++ GKT+ DA G++L ++ +
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKI 94
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.091
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 318 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 443
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 282 YVDSKTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 410
Y ++T W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 294 KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 416
KT NW ++TNP V + + EL ++ Y+T
Sbjct: 252 KTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYET 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,079
Number of Sequences: 5004
Number of extensions: 53092
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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