Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16m07
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 229 2e-61
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.58
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 29 0.77
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 3.1
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 3.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 4.1
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 5.4
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 7.2
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 9.5
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 9.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 9.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 9.5
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 229 bits (561), Expect = 2e-61
Identities = 110/199 (55%), Positives = 143/199 (71%), Gaps = 1/199 (0%)
Frame = +2
Query: 53 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 232
MPQNEYIE + +GRR D+ RGIKAK++ ++RR EKIQ
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60
Query: 233 MKKKIKAHEEKNVKQN-TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 409
MKK IK HEE+N Q ++ +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61 MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120
Query: 410 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 589
+P+VR A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180
Query: 590 AHVTHPELKATFCLPIIGV 646
A+VTH EL T LPIIGV
Sbjct: 181 ANVTHKELGVTMQLPIIGV 199
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.58
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 298 FGDLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 125
F LL F +L F+ F F F F++ I YF SF F LF F+ + F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170
Query: 124 FSL 116
FSL
Sbjct: 171 FSL 173
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.7 bits (61), Expect = 0.77
Identities = 22/84 (26%), Positives = 46/84 (54%)
Frame = +2
Query: 209 ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 388
E+ + K+++ ++ +K +++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 389 AGKWDVPIPKVRAQADAEVFKVLK 460
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +2
Query: 425 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 562
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 259 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 137
FV D FL+ LF LI +F+ F LFS F S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 206 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPV 313
+ + NE + + + ++ E+N +NTE++AE + P+
Sbjct: 98 ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 278 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 412
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 53 MPQNEYIERHQKL 91
+PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 332 VQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVT 511
+Q R +VLS ++++ K++ V PK + + ++LKS + + T T
Sbjct: 40 LQPRLEVLSQLLRECPKQEL---TVNGPKFHSMY-LYISEILKSKAESLRIRNSLATLQT 95
Query: 512 FVGENFTRKP 541
F+ E RKP
Sbjct: 96 FLAELSVRKP 105
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 220 IAAFLIEYFSFDTAEFARLF-SAFMRLTSFTLP 125
IAAFL YFS AEF F S LT+ P
Sbjct: 229 IAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +2
Query: 185 IKAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNM 364
+K KI +E +E ++ K+ K E+N + +T VAE P + + + +++
Sbjct: 204 LKQKI--EEENDEILEDSKESKDENEENKETSTTNVAETDAP----EEETVDTVEEIADE 257
Query: 365 IKQKRKEKAGK 397
K KE++G+
Sbjct: 258 EKHSVKEESGE 268
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +2
Query: 197 IFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLD-------RDVQSRAKVL 355
+++ +++ + KK+KAH++K + E E A V D +DV++ A
Sbjct: 48 VYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAA 107
Query: 356 SNMIKQKRKEKAGK 397
+ K+K+ +K K
Sbjct: 108 AAAKKKKKNKKKVK 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,837
Number of Sequences: 5004
Number of extensions: 41170
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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