Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m05
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    50   2e-08
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    50   2e-08
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
 Frame = +2

Query: 185 KAFLAGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQI 364
           K FLAG  +   S     P++ VK  LQ    H+       +   GMI  F  I +++  
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQV--QHISKQISEEQRYKGMIDCFVRIPKEQGF 69

Query: 365 VGLWRGMIPSVARCVPGVGLYFSSLHWLK----GKMGKSTGDLKAIEAVLL-GVVARTMS 529
           +  WRG + +V R  P   L F+     K    G + K+T  L+     L  G  A   S
Sbjct: 70  LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATS 129

Query: 530 GIALIPITVIKTRYESGVYK------YTSLSGALKSIYKAEG 637
              + P+   +TR  + V K      +T L   L  I+KA+G
Sbjct: 130 LCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADG 171



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 6/153 (3%)
 Frame = +2

Query: 197 AGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQIVGLW 376
           +G  +G  S     PLD  +TRL       +      R   G+      I + + I GL+
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD----VGKAGGEREFTGLGNCLTKIFKADGITGLY 176

Query: 377 RGMIPSVARCVPGVGLYFSSLHWLKGKMGKSTGDLKAIEAVLLGVVARTMSGIALIPITV 556
           RG   SV   +     YF      +G +         I   +  VV  T++GI   P   
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVT-TVAGIVSYPFDT 235

Query: 557 IKTR--YESGVYK----YTSLSGALKSIYKAEG 637
           ++ R   +SG  K    Y S      +IYK EG
Sbjct: 236 VRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
 Frame = +2

Query: 185 KAFLAGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQI 364
           K FLAG  +   S     P++ VK  LQ    H+       +   GMI  F  I +++  
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQV--QHISKQISEEQRYKGMIDCFVRIPKEQGF 69

Query: 365 VGLWRGMIPSVARCVPGVGLYFSSLHWLK----GKMGKSTGDLKAIEAVLL-GVVARTMS 529
           +  WRG + +V R  P   L F+     K    G + K+T  L+     L  G  A   S
Sbjct: 70  LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATS 129

Query: 530 GIALIPITVIKTRYESGVYK------YTSLSGALKSIYKAEG 637
              + P+   +TR  + V K      +T L   L  I+KA+G
Sbjct: 130 LCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADG 171



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 6/153 (3%)
 Frame = +2

Query: 197 AGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMAATVNGRIQPGMITIFANIIRQEQIVGLW 376
           +G  +G  S     PLD  +TRL       +      R   G+      I + + I GL+
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAAD----VGKAGGEREFTGLGNCLTKIFKADGITGLY 176

Query: 377 RGMIPSVARCVPGVGLYFSSLHWLKGKMGKSTGDLKAIEAVLLGVVARTMSGIALIPITV 556
           RG   SV   +     YF      +G +         I   +  VV  T++GI   P   
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVT-TVAGIVSYPFDT 235

Query: 557 IKTR--YESGVYK----YTSLSGALKSIYKAEG 637
           ++ R   +SG  K    Y S      +IYK EG
Sbjct: 236 VRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 403 SGNGGYHPSPQSNDLLLTDYVS 338
           S  GG+HPS +S  L+L  + +
Sbjct: 568 SALGGWHPSDRSARLMLQPWAN 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,021
Number of Sequences: 438
Number of extensions: 4513
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)