Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16m02
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom... 28 0.93
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 28 1.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 1.6
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 27 2.2
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 2.2
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 27 2.8
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 3.8
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 26 3.8
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 5.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 8.7
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 8.7
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 8.7
>SPAP11E10.01 |||ornithine cyclodeaminase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 330
Score = 28.3 bits (60), Expect = 0.93
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Frame = +1
Query: 256 VSQSQGSKVTKTNQPAMPNL--EVVSRVASIPIVVSGIG-VTEKL---YFKIRESNPLFR 417
++Q G+++T A L +S+ S +++ G G V EKL + +R +
Sbjct: 103 LAQLDGNELTSRRTAAASALASSYLSKEDSTSLLIIGSGKVAEKLIHAHCSVRPIRSVRI 162
Query: 418 WSMSL-GEKSLATGIQLALPAVQLLETPIVQLDKFLCKSLDVVEKS 552
W+ KSLA+ LP++Q+ PI L+ + K D++ +
Sbjct: 163 WNHRFESAKSLASRASKELPSIQIDAVPIQNLENAV-KCSDIISSA 207
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.2
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 145 NGNGD-VSKKSFNGTCTVGVNKKVKASIARKAEAYLQAVSQSQGSKVTKTNQPAMPNLEV 321
+G G+ ++ SF + + NKK+ SI + A+ +LQ + +T + P+
Sbjct: 100 SGPGNPITPGSFLNSLEIATNKKLVRSIQQDAQEFLQ--------HLVETLELQKPHTYK 151
Query: 322 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 474
S+V S P+ IG E+ K++ L ++S+ S AT IQL LP
Sbjct: 152 WSKVLSFPVDSPFIGTMEQ---KVQCCQCL---AISI-SYSTATSIQLCLP 195
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +1
Query: 250 QAVSQSQGSKVTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMS 429
+ V QS K+ N P LE S++ I V G ++YF ++ S + S
Sbjct: 43 EMVCQSTNVKIPYFNAPIY--LENKSQIGKIDEV---FGPMNQVYFTVKPSEGIVSSSFK 97
Query: 430 LGEKSLATGIQLALPAVQLLETP 498
+G+K +G +L +P + L P
Sbjct: 98 VGDKVYLSGDKL-IPLDRFLPKP 119
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 585 HLLWRHIN*RHTLLDHIQRLAEKLVQLYNRSFQELNRRE 469
HLL H +T+LDH+ ++ K++ Y S +LN E
Sbjct: 249 HLLEAH----NTILDHVALVSPKVLNSYTNSAVDLNYEE 283
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 115 YTTKITVTRMNGNGDVSKKSFNGTCTVGVNKKVKASIARKAEAYLQAVSQSQGSKVTKTN 294
Y ++ R D+ + F GT T+ V +K +A + + + + S +TK +
Sbjct: 604 YFQRLVCWRFLKLDDMEEFQFKGTVTLRVKNLLKHYFTAQALYHEECLVNGRASPITKPS 663
Query: 295 QPA-MPNLEVV 324
+P M L +V
Sbjct: 664 EPVPMRRLTIV 674
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 215 RLQLLGKPRPTCRLLVRVKDLK*RKQISQPCRILKWSQGLHPYRSSCPVLE 367
+L+ KP+P LL + L RK PC I + PYR+ V+E
Sbjct: 54 KLKNSSKPKPKHELLKLRESLALRKISKHPCLIDLLETFMDPYRNIFLVME 104
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 397 ESNPLFRWSMSLGEKSLATGIQLALPAVQLLET--PIV 504
ES +F W +GE+ IQ +L A+QLLE P+V
Sbjct: 431 ESFMMFVWKKKIGEELKKWIIQDSLKALQLLEAWDPVV 468
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 340 IPIVVSGIGVTEKLYFKIRESNPLF 414
IP++ SG+ K+ +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 595 SLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSEFPG 485
S S+SP+ Y+ S PH A ++ + Q + PG
Sbjct: 180 SQSSSPIANYQESGNSEEPHKAEEQQQLSIYQLDNPG 216
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 589 STSPLEAYKLKAYSSRPHPATCRETCPVVQSEFPGVEPPGVLAVCRSLGTS 437
S+SPL + + YS HP+T + V S+ +PP V + SL S
Sbjct: 31 SSSPLPSNSCREYSLPSHPSTHNSSVAYVDSQ--DNKPPLVSTLHFSLAPS 79
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 136 TRMNGNGDVSKKSFNGTCTVGVNKKVKASIARKAEAYLQAVSQSQGSKVTKTNQPAMPN 312
T N VS + T TVG +K + AS+ + S+ G + N+ MP+
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVNRTVMPS 504
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 535 DVVEKSMPSIYMPPEEMYSETRQYVLR 615
D + ++ + +PPEE Y+E VLR
Sbjct: 354 DGKKSAVRRVVLPPEEAYAEATSVVLR 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,337
Number of Sequences: 5004
Number of extensions: 54052
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -