Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16m02
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0586 - 4334896-4335177,4336340-4338007 30 1.3
11_01_0064 + 489196-489261,489594-489938 30 1.7
06_01_0768 + 5742938-5743196,5743291-5744729 30 1.7
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 29 2.2
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 29 2.2
03_01_0387 + 3008323-3008443,3008561-3008876,3008982-3009294 29 2.9
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 2.9
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 28 5.1
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20... 28 6.8
03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676 28 6.8
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 27 8.9
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 214 KASIARKAEAYLQAVSQSQGSKVTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKI 393
K+S A A + A+ + S K +P PN A+ P ++ + KLY I
Sbjct: 46 KSSAAAATPASIDAIDRHLRSLHLKYAEPISPNPSPSPTSAAAPAALNAV----KLYLHI 101
Query: 394 RESNPLFRWSMS 429
S+P RW +S
Sbjct: 102 GGSSPSARWIIS 113
>11_01_0064 + 489196-489261,489594-489938
Length = 136
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -3
Query: 539 TSSDLQRNLSSCTIGVSRS*TAGSASCMPVARDFSPRDIDQRNRGLDSLILKYNFSVTPI 360
T +D + + TIG + S T + + R +P DID R+R + +S+T
Sbjct: 43 THTDHETINTITTIGTTTSSTPNTINIQAYIRQDTPPDIDFRDR--------HGYSLTVS 94
Query: 359 PDTTIGMDATLETTSRFG 306
PDT ++T+ +R G
Sbjct: 95 PDTVRRDESTISDLARHG 112
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 438 LTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 292
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 463 LALPAVQLLETPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETR 600
L + A L T +++KF+ K+LD E + +Y+ PE++ R
Sbjct: 168 LGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKR 213
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 235 AEAYLQAVSQSQGSKVTKTNQPAMPNLEVVSRVASIPIVVSG 360
AEAY A + +G+ +P+ NLE +S+ + +PI VSG
Sbjct: 333 AEAYDVAALKFRGANAVTNFEPSRYNLEAISQ-SDLPISVSG 373
>03_01_0387 + 3008323-3008443,3008561-3008876,3008982-3009294
Length = 249
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 109 FEYTTKITVTRMNGNGDVSKKSFNGTCT 192
F Y + VT M G+G ++ S G+CT
Sbjct: 162 FNYFELVLVTNMAGSGSIASMSVKGSCT 189
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 322 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 474
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 489 GNSDCTTGQVSLQVAGCGREEYAFNL 566
G DC G++ L AG R E AFN+
Sbjct: 161 GTIDCYEGELQLLPAGARRREIAFNM 186
>11_01_0027 -
199196-199396,199514-199651,200207-200284,200419-200604,
200754-200846,201665-201731,202374-202675
Length = 354
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 111 RIHHENNGH--KDEW*WRRFQKKLQWHM 188
R HH+N+GH +DE W +KL W +
Sbjct: 106 RTHHQNHGHIERDES-WHPITEKLYWQL 132
>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
Length = 240
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 109 FEYTTKITVTRMNGNGDVSKKSFNGTCT 192
F Y + VT M G+G + S G+CT
Sbjct: 153 FNYFELVLVTNMAGSGSIVSMSVKGSCT 180
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 543 DHIQRLAEKLVQLYNRSFQELNRREC*LYAGR*GLLTQGHRP-TKQRVGLPYFEVQFFC 370
DH + +K++Q +Q LNR +C + R G++ GHR ++ + F + FFC
Sbjct: 445 DHCLQNLDKVLQRCQEKYQVLNREKC-HFMVREGIVL-GHRVFEREDKIMEKFIIYFFC 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,913
Number of Sequences: 37544
Number of extensions: 364608
Number of successful extensions: 997
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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