Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m02
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    33   0.12 
AF039719-10|AAB96751.2|  568|Caenorhabditis elegans Hypothetical...    29   2.0  
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical p...    28   6.1  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +1

Query: 235 AEAYLQAVSQSQGSKVTKTNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESN 405
           A  + Q  +QS  + V  TN+ A   L     V S    VSG   + +  K YF  ++S+
Sbjct: 109 AVIFWQWANQSFNALVNYTNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSS 168

Query: 406 PLFRWSMSLGEKSLATGIQLAL 471
           PL +  + LG  ++A  I + +
Sbjct: 169 PLAQRLVPLGAVAVANAINIPM 190


>AF039719-10|AAB96751.2|  568|Caenorhabditis elegans Hypothetical
           protein K04F10.2 protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 121 TKITVTRMNGNGDVSKKSFNG 183
           ++ TVT  +GN D+SKK FNG
Sbjct: 293 SQYTVTTSDGNSDLSKKLFNG 313


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = -1

Query: 616 VGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSEFPGVEP---PGVLAVCRSL 446
           V   I  SL T+ ++A      SS+P  AT  E  P+  S  P  EP   P       S 
Sbjct: 303 VSTTISTSLETTIMQASSASPISSKP--ATTTEPSPLQASSKPATEPLLQPESARTASSS 360

Query: 445 GTSHPGT*TN-ETEGWTP 395
            +S P   T   TE  TP
Sbjct: 361 ASSKPEVQTTIPTEIQTP 378


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 124 KITVTRMNGNGDVSKKSFNGTCTVGVNKKVKASIARKA-EAYLQAVSQSQGSKV 282
           KI    ++ +GDVS        T  +NK VKA+ A KA +  + A ++S+ + +
Sbjct: 786 KICAVLLSKSGDVSNAFIRDDATDSLNKLVKAATAGKALQGIILAGAKSKNNTI 839


>Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK637.10 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 354 HDDRYGCNP*DHFKIRHGWLICFRHFRSLTLTNS 253
           H D+YG N  D  KI+H W +  ++       N+
Sbjct: 90  HADKYGWNGIDQEKIKHDWNVLSKNVNDRVKANN 123


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
            K10D2.1a protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 328  RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 438
            R+ S+P++   IGVTE   + + E+  L  W++ LG+
Sbjct: 984  RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,418
Number of Sequences: 27780
Number of extensions: 313246
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)