Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16m02
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.78 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.78 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 203 FTPTVHVPLKLFLETSPLPFILVTVIFVVYSNDIRN 96
           FTP   V  K+  +++ LPFI  T I ++ S D+++
Sbjct: 296 FTPFGPVTEKVNNDSNSLPFIDRTPIEIINSGDVQD 331


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 203 FTPTVHVPLKLFLETSPLPFILVTVIFVVYSNDIRN 96
           FTP   V  K+  +++ LPFI  T I ++ S D+++
Sbjct: 296 FTPFGPVTEKVNNDSNSLPFIDRTPIEIINSGDVQD 331


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 402 QPSVSLVYVPG*EVPSDRHTASTPGGSTPGNSDCTT 509
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 391 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 426


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 402 QPSVSLVYVPG*EVPSDRHTASTPGGSTPGNSDCTT 509
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 411 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 402 QPSVSLVYVPG*EVPSDRHTASTPGGSTPGNSDCTT 509
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 360 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 395


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 IHTDRRVRYWSDRKIVLQ 389
           I  DRR R+ SDR + L+
Sbjct: 335 IQNDRRTRHLSDRVVALE 352


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 213 DFFIHAHRTCAIEAFFGNVSITIHPCDRY 127
           DF+I    TC+  + F  V+I+I   DRY
Sbjct: 260 DFYIAMDVTCSTSSIFNLVAISI---DRY 285


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 261 SESRI*SDENKSASHAES*SGLKG--CIHTDRRVRYWSDRKIVLQN 392
           S+S + SDE+++     S + ++G    H D R+RYW    +V+ +
Sbjct: 248 SDSAVLSDEDQTKGWDGS-NMVEGNESDHNDGRLRYWRTPSVVVSD 292


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 551 VCLQFICLQRRCTQRRVN 604
           V L F+    RCTQ +VN
Sbjct: 10  VLLTFLLHPSRCTQGKVN 27


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 551 VCLQFICLQRRCTQRRVN 604
           V L F+    RCTQ +VN
Sbjct: 10  VLLTFLLHPSRCTQGKVN 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,393
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)