Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16k17
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   0.88 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   4.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.2  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = +2

Query: 236 HFFHSNR--ISWNSCNN-WN 286
           +FF S R  + W SCNN WN
Sbjct: 87  YFFMSMRSELPWGSCNNYWN 106


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 174 ILQAYEYIEASFTIADRIYGST 239
           +LQA EYIE     A+  Y ST
Sbjct: 6   LLQAAEYIERREREAEHGYAST 27


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  SIPNSLIKYNHFN*IWGNSNMSSSL 100
           +I N+  KYN+ N  + N+N +  L
Sbjct: 88  TIHNNNYKYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  SIPNSLIKYNHFN*IWGNSNMSSSL 100
           +I N+  KYN+ N  + N+N +  L
Sbjct: 88  TIHNNNYKYNYNNNNYNNNNYNKKL 112


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 183 AYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFL 296
           A + +EA   + DR  G    I  G H   V+ G + L
Sbjct: 496 ALDMVEAITDLKDRSTGLHLQIRVGVHSGAVVAGIVGL 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,524
Number of Sequences: 438
Number of extensions: 1696
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)