Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16k04
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.9  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 71  FLVQKVQIPNFRIS*YKKNKRHSSKHRYTNSIVSVGTSVLKNLELSWTLG 220
           FL+  +  P+  +     NK+H   H YT S+V      L  L    TLG
Sbjct: 172 FLIHWIWTPHGWMRRNVLNKQHVHFHDYTGSVVIHVVGGLTGLIGCLTLG 221


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 9   WNISDIKIQYSAKDKNERH*FS*SKRCRFRTSGFLN 116
           +++SD+K  Y A  + +   F   + C F+   F++
Sbjct: 32  FDLSDLKSMYEANSEEQMKKFGCFEACVFQKLHFMD 67


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 367 LLYELKLKVSDILDIN 320
           L  ++KLK+S ++D+N
Sbjct: 50  LTVKIKLKLSQLIDVN 65


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 103  QDFLIQEKQKAQFQAQIHE 159
            ++FL+ E  + +F+A +HE
Sbjct: 1133 RNFLLTEWSRFEFRAALHE 1151


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 370 VLLYELKLKVSDILDIN 320
           VL   +KLK+S ++D+N
Sbjct: 53  VLRVCIKLKLSQLIDVN 69


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 370 VLLYELKLKVSDILDIN 320
           VL   +KLK+S ++D+N
Sbjct: 53  VLRVCIKLKLSQLIDVN 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,826
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)