Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16j22
(522 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein. 30 4.3
BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 4.3
BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 4.3
BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 4.3
BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 4.3
BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 4.3
X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein. 30 5.7
CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein. 29 7.5
BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein. 29 7.5
BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein. 29 7.5
BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein. 29 7.5
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 29 9.9
AC005254-1|AAC25581.1| 315|Homo sapiens PGCN_HUMAN, PARTIAL CDS... 29 9.9
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p... 29 9.9
>X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEAS-----FATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTTSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein.
Length = 1938
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 485 SLPSEGEASFATTAVVEIAASV-IKSTTGPLLDISTVAPATLVDELVSVSTVAVLPSAVT 309
+L +G T V S + G S P T + + ++S+ + P+A+T
Sbjct: 774 TLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPITTLGTIATLSSQVINPTAIT 833
Query: 308 ETSAATDLTFLEGVTS 261
++A T LT G+T+
Sbjct: 834 VSAAQTTLTAAGGLTT 849
>CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein.
Length = 522
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 488 YSLPSEGEASFATTAVVEIAASVI-----KSTTGPLLDISTVAPATLVDELVSVSTVAVL 324
+SL + G AS +T A + STTG L++ +APA + + T
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPG 315
Query: 323 PSAVTETSAATDLTFLE 273
P A +A++ +T+ +
Sbjct: 316 PGAAAGAAASSAMTYAQ 332
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 29.1 bits (62), Expect = 9.9
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -2
Query: 512 EDEVSAETYSLPSEGEASFATTAVVEIAASVIKSTTGPLLDISTVAPATLVDELVSVSTV 333
+D V +ET S+ + T+ + S+ PLL ++ +P T + S S++
Sbjct: 6191 QDFVDSETTSVMNNDLNDVLKTSPFSAEEANSLSSQAPLLVTTSPSPVTSTLQEHSTSSL 6250
Query: 332 AVLPSAVTETSA-ATDL-TFLEGVTSSFQRL 246
+ S T T A TD+ T LE VT S Q L
Sbjct: 6251 VSVTSVPTPTLAKITDMDTNLEPVTRSPQNL 6281
>AC005254-1|AAC25581.1| 315|Homo sapiens PGCN_HUMAN, PARTIAL CDS
protein.
Length = 315
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 110 RLTQHHHHGMLQHQNLTHRSR 172
R+ +HHHH HQ+ H+SR
Sbjct: 273 RMRRHHHHHQHHHQHHHHKSR 293
>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
protein.
Length = 1335
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 110 RLTQHHHHGMLQHQNLTHRSR 172
R+ +HHHH HQ+ H+SR
Sbjct: 1293 RMRRHHHHHQHHHQHHHHKSR 1313
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.302 0.117 0.309
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,532,527
Number of Sequences: 237096
Number of extensions: 823008
Number of successful extensions: 1141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
- SilkBase 1999-2023 -