Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16j02
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    27   2.4  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    26   4.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.2  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    26   5.6  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   7.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   7.4  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    25   9.8  

>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 549 SENVQIRTEGPDSDEEDD 602
           S    + TEGP+SDEED+
Sbjct: 16  SSETSLLTEGPESDEEDE 33


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 237 EENTPNVSLISCMHFVQRGVAKAVPEKIELTQGELE---NIIRQTANDLR 377
           EE T  + L +    +Q+  A+ +  K+EL + ELE    ++R+T   +R
Sbjct: 61  EEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMR 110


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 370 SLAVCLIMFSSSPWVNSIFSGTAFATPLCTKCMHDIRLTLGVFSSSIVPMS 218
           SL     +  SSP ++S  + T+ +TP  T   H I  +   ++SS++P S
Sbjct: 552 SLQTSSSLIISSPIISSSLTATSTSTPALT---HSITPSNTSYTSSLIPSS 599


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 261 LISCMHFVQRGVAKAVPEKIELTQGELENIIRQTAN 368
           +I C+  V   ++ AV ++I L    LEN+ +  AN
Sbjct: 123 VIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAAN 158


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 531 PNLGDLSENVQIRTEGPDSDEEDDIIKPEDNLLLV 635
           P L   + +V +    PD ++ D ++ P DN+ ++
Sbjct: 371 PQLYSRTSDVTVELTHPDPNDSDKMVMPGDNVEMI 405


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 398 VISLLCNPQVISCLSDYVL 342
           ++  LC P+V+S L DY+L
Sbjct: 50  LLEYLCKPEVLSQLIDYIL 68


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 261 LISCMHFVQRGVAKAVPEKIELTQGELENIIRQTAN 368
           +I C+  V   ++ AV ++I +    LEN+ +  AN
Sbjct: 123 VIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAAN 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,974
Number of Sequences: 5004
Number of extensions: 43811
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)