Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16i14
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 443  KYTIYGRVIDGFEALD 490
            KY +Y RV+DG E L+
Sbjct: 1246 KYNLYTRVVDGREELN 1261


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 443  KYTIYGRVIDGFEALD 490
            KY +Y RV+DG E L+
Sbjct: 1242 KYNLYTRVVDGREELN 1257


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 224 NNHYSNHLHIELENSHTLS 168
           NNHY++H H+      TL+
Sbjct: 120 NNHYTSHQHLRTHLRGTLT 138


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 98  ETMAVTLHTDVGDIKIELYCEQC 166
           E  A + HTD+G+ +   + +QC
Sbjct: 788 EYYAASFHTDIGNSQSLAHQDQC 810


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 567 WIVTDVILASVSGLKDLGFTGIFSKSSNASKPSITLP*MVYFKS 436
           WI  +   A V+    LG T + + S+  +K   +LP + Y K+
Sbjct: 267 WIKPEAAPARVT----LGVTSLLTLSTQHAKSQASLPPVSYLKA 306


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 577 WICMDCDRCDLGFCQWS 527
           W   D  RC++ F  W+
Sbjct: 154 WFPFDDQRCEMKFGSWT 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,230
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)