Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16h24
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047290-1|AAH47290.1|  180|Homo sapiens signal peptidase comple...   193   3e-49
AY359044-1|AAQ89403.1|  180|Homo sapiens signal peptidase protein.    193   3e-49
AK026302-1|BAB15437.1|  180|Homo sapiens protein ( Homo sapiens ...   193   3e-49

>BC047290-1|AAH47290.1|  180|Homo sapiens signal peptidase complex
           subunit 3 homolog (S. cerevisiae) protein.
          Length = 180

 Score =  193 bits (471), Expect = 3e-49
 Identities = 86/158 (54%), Positives = 116/158 (73%)
 Frame = +3

Query: 90  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 269
           M +VL+R N++  ++LSV               D     +++  ++++KNV D+   RER
Sbjct: 1   MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRER 60

Query: 270 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 449
           +DLGF+TFD+  DL N+F+WNVKQLFLYL+AEY T +N LNQVVLWDKI+LRG+N  L  
Sbjct: 61  SDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLL 120

Query: 450 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLP 563
           K+M TKY+F+DDGNGLKG+ NVTLTLSWN++PNAG+LP
Sbjct: 121 KDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILP 158


>AY359044-1|AAQ89403.1|  180|Homo sapiens signal peptidase protein.
          Length = 180

 Score =  193 bits (471), Expect = 3e-49
 Identities = 86/158 (54%), Positives = 116/158 (73%)
 Frame = +3

Query: 90  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 269
           M +VL+R N++  ++LSV               D     +++  ++++KNV D+   RER
Sbjct: 1   MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRER 60

Query: 270 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 449
           +DLGF+TFD+  DL N+F+WNVKQLFLYL+AEY T +N LNQVVLWDKI+LRG+N  L  
Sbjct: 61  SDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLL 120

Query: 450 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLP 563
           K+M TKY+F+DDGNGLKG+ NVTLTLSWN++PNAG+LP
Sbjct: 121 KDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILP 158


>AK026302-1|BAB15437.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22649 fis, clone HSI07332. ).
          Length = 180

 Score =  193 bits (471), Expect = 3e-49
 Identities = 86/158 (54%), Positives = 116/158 (73%)
 Frame = +3

Query: 90  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 269
           M +VL+R N++  ++LSV               D     +++  ++++KNV D+   RER
Sbjct: 1   MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRER 60

Query: 270 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 449
           +DLGF+TFD+  DL N+F+WNVKQLFLYL+AEY T +N LNQVVLWDKI+LRG+N  L  
Sbjct: 61  SDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLL 120

Query: 450 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLP 563
           K+M TKY+F+DDGNGLKG+ NVTLTLSWN++PNAG+LP
Sbjct: 121 KDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILP 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,760,487
Number of Sequences: 237096
Number of extensions: 1434096
Number of successful extensions: 2284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2284
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)