Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16h07
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 70  TTRHVSLWTSHNTVNNTKV 126
           TT +VS  T++NT NN+++
Sbjct: 719 TTGNVSYLTTNNTSNNSQL 737


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 66  TITFNEVYKLK*ALIVMTL 10
           T+TF+E+ K    L V+TL
Sbjct: 342 TLTFHEILKRANTLFVLTL 360


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 144 PAEVVRDFRIINCVMRRPQRNMTSSNT 64
           P + V+D    NC  + P R +  +NT
Sbjct: 141 PIKRVKDSTNCNCGWKNPSRIVGGTNT 167


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 470 LIFYCMAGRRSAKAQESAINLGFKNTKN 553
           ++F+      +A +   AIN GF+ TK+
Sbjct: 263 MLFFYWRIYNAAVSTTKAINQGFRTTKS 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,168
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)